Adam P. Arkin

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• KBase Research Agent: Automated Multi-Agent Workflow Construction for Reproducible Genome Analysis

  2026-06-26

• Single_cell_carbon_storage_dynamics_drive_conditional_fitness_in_microbes

  Zenodo (CERN European Organization for Nuclear Research) · 2026-05-01

• Single-cell carbon storage dynamics drive conditional fitness in microbes

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-04-10

• Single_cell_carbon_storage_dynamics_drive_conditional_fitness_in_microbes

  Zenodo (CERN European Organization for Nuclear Research) · 2026-04-07

• Enabling the prediction of phage receptor specificity from genome data

  Figshare · 2026-04-02

• The WalRK two-component system in <i>Streptococcus pneumoniae</i> ensures robustness of secondary wall polymer attachmentPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-03-26

• Niche exclusion of a lung pathogen in mice with designed probiotic communities

  eLife · 2025-12-16

• Niche exclusion of a lung pathogen in mice with designed probiotic communities

  eLife · 2025-12-16

• Phylogeny-agnostic strain-level prediction of phage-host interactions from genomesPreprint

  Research Square · 2025-12-01 · 1 citations

• Construction of a randomly barcoded insertional mutant library in the filamentous fungus <i>Trichoderma atroviride</i>Preprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-12-01 · 1 citations

• Phylogeny-agnostic strain-level prediction of phage-host interactions from genomesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-11-15 · 4 citations

• Droplet-based Random Barcode Transposon-site Sequencing (Droplet RB-TnSeq) to characterize phage-host interactionsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-09-29 · 1 citations

• Dual transposon sequencing profiles the genetic interaction landscape in bacteria

  Science · 2025-09-25 · 3 citations

• Finding sustainable, resilient, and scalable solutions for future indoor agriculture

  npj Science of Plants · 2025-09-01 · 5 citations

• Sediment and groundwater metagenomes from subsurface microbial communities from the Oak Ridge National Laboratory Oak Ridge Reservation, Oak Ridge, Tennessee, USA

  Microbiology Resource Announcements · 2025-06-27

• Novel origin of replication for environmentally isolated <i>Pantoea</i> strain enables expression of heterologous proteins, pathways and productsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-12

• Tu1190: ALTERED METABOLITES DIFFERENTIATE CROHN’S DISEASE FROM CONTROLS: A SYSTEMATIC REVIEW

  Gastroenterology · 2025-05-01

• Modest functional diversity decline and pronounced composition shifts of microbial communities in a mixed waste-contaminated aquifer

  Microbiome · 2025-04-28 · 8 citations

• Modified PowerMax Soil Kit Protocol for DNA Extraction from Sediment or Water Filters v1Preprint

  2025-03-17

• Lactuchelins: New lipopeptide siderophores from <i>Pseudomonas lactucae</i> inhibit <i>Xanthomonas campestris</i> pv. <i>campestris</i> 8004Preprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-02-28 · 2 citations