Alan P. Boyle

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• SEMPLR: an R package for transcription factor binding prediction

  Bioinformatics · 2026-06-01

• Abstract 4645: Integrative transcriptomic and CRISPRi screening identifies determinants of intrinsic radiosensitivity in breast cancer

  Cancer Research · 2026-04-03

• 3D chromatin compartment of round spermatids encodes the spatiotemporal program of histone-to-protamine exchange in spermiogenesis

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-03-12

• Massively parallel reporter assay investigates shared genetic variants of eight psychiatric disorders

  UNC Libraries · 2026-02-07

• The IGVF catalog—from genetic variation to function

  Nucleic Acids Research · 2025-12-08 · 3 citations

• Multi-platform framework for mapping somatic retrotransposition in human tissuesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-10-07 · 1 citations

• Cryptic intronic transcriptional initiation generates efficient endogenous mRNA templates for C9orf72-associated RAN translation

  Proceedings of the National Academy of Sciences · 2025-08-04 · 8 citations

• Draft <i>de novo</i> genome construction of <i>Scytonema</i> sp. PRP1: identified from single-cell sequencing library preparation

  Microbiology Resource Announcements · 2025-08-01

• The Somatic Mosaicism across Human Tissues Network

  Nature · 2025-07-02 · 42 citations

• Abstract P1-09-27: MELK as a mediator of stemness and metastasis in aggressive subtypes of breast cancer

  Clinical Cancer Research · 2025-06-13

• GPatch enables chromosome-scale, gap-free pseudoassemblies from fragmented draft genomesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-27

• Long-term immune reprogramming of classical monocytes with altered ontogeny mediates enhanced lung injury in sepsis survivorsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-21 · 1 citations

• Cryptic intronic transcriptional initiation generates efficient endogenous mRNA templates for C9orf72-associated RAN translationPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-04-30

• Abstract 1469: Deciphering mechanisms of intrinsic radioresistance in breast cancer: Insights from transcriptomics and CRISPRi screens

  Cancer Research · 2025-04-21

• Author Correction: An activity-regulated transcriptional program directly drives synaptogenesis

  UNC Libraries · 2025-04-10

• Author Correction: An activity-regulated transcriptional program directly drives synaptogenesis

  Nature Neuroscience · 2025-04-02

• MELK as a Mediator of Stemness and Metastasis in Aggressive Subtypes of Breast Cancer

  International Journal of Molecular Sciences · 2025-03-03 · 4 citations

• Massively parallel reporter assay investigates shared genetic variants of eight psychiatric disorders

  Cell · 2025-01-22 · 37 citations

• Massively parallel reporter assay investigates shared genetic variants of eight psychiatric disorders

  Open MIND · 2025-01-01

• Enhanced detection and genotyping of disease-associated tandem repeats using HMMSTR and targeted long-read sequencing

  Nucleic Acids Research · 2024-11-19 · 5 citations