Alban Ramette

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Complete genome sequences of three <i>Brucella abortus</i> strains isolated from animals in 1954 in Switzerland

  Microbiology Resource Announcements · 2026-06-15

• Complete genome sequences of three Brucella abortus strains isolated from animals in 1954 in Switzerland.

  Open Access CRIS of the University of Bern · 2026-06-15

• From clinics to sewers: leveraging environmental surveillance and whole genome sequencing to inform transmission of ESBL- <i>Escherichia coli</i> in Switzerland

  Applied and Environmental Microbiology · 2026-04-06 · 1 citations

• Genomic association of Campylobacter concisus for colonization advantages and virulence in children and adolescents with inflammatory bowel disease

  BMC Microbiology · 2026-03-17

• Evaluation of Oxford Nanopore Technologies workflows for genomic epidemiology of outbreak-associated bacterial isolates in the clinical setting

  Microbial Genomics · 2026-02-10 · 1 citations

• Evaluation of Oxford Nanopore Technologies workflows for genomic epidemiology of outbreak-associated bacterial isolates in the clinical setting.

  Open Access CRIS of the University of Bern · 2026-02-01

• Machine learning-based short-term forecasting of COVID-19 hospital admissions using routine hospital patient data.

  Open Access CRIS of the University of Bern · 2026-01-13

• Machine learning-based short-term forecasting of COVID-19 hospital admissions using routine hospital patient data

  Epidemics · 2025-12-19

• Resolving the <i>CES1</i> Genomic Locus with Cas9-Directed Targeted Long-Read Sequencing for Precision Pharmacogenomics

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-12-05

• Performance and Practicality of 16S Nanopore Sequencing for Routine Bacterial Identification in Clinical Samples

  medRxiv · 2025-12-04

• Characterization of Phylogenetically Distinct Temperate Phages from Kenyan Mammaliicoccus sciuri.

  Open MIND · 2025-12-01

• Characterization of Phylogenetically Distinct Temperate Phages from Kenyan <i>Mammaliicoccus sciuri</i>

  PHAGE · 2025-10-09

• From clinics to sewers: leveraging environmental surveillance and whole genome sequencing to inform transmission of ESBL- <i>Escherichia coli</i> in SwitzerlandPreprint

  medRxiv · 2025-09-14 · 1 citations

• Reviews of "Next-Generation Sequencing Methods for Sensitive Characterisation of Hepatitis B Viral Genomes: A European Multicentre Study"

  2025-09-09

• Unveiling the Terra Cognita of Sequence Spaces using Cartesian Projection of Asymmetric DistancesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-09-09

• Review 2: "Next-Generation Sequencing Methods for Sensitive Characterisation of Hepatitis B Viral Genomes: A European Multicentre Study"

  2025-09-09

• Machine learning-based short-term forecasting of COVID-19 hospital admissions using routine hospital patient dataPreprint

  medRxiv · 2025-05-21 · 1 citations

• Component specific responses of the microbiomes to common chemical stressors in the human food chain

  Environmental Microbiome · 2025-04-28 · 1 citations

• Evaluation of Oxford Nanopore Technologies workflows for genomic epidemiology of outbreak‐associated bacterial isolates in the clinical settingPreprint

  medRxiv · 2025-04-28 · 2 citations

• Field evaluation of nanopore targeted next-generation sequencing to predict drug-resistant tuberculosis from native sputum in South Africa and Zambia

  Journal of Clinical Microbiology · 2025-02-12 · 9 citations