Alexey I. Nesvizhskii

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Evaluating the Performance of Photon- and Electron-Based Fragmentation Methods in Omnitrap-LCMS Analysis of <i>N</i> -Glycopeptides

  Analytical Chemistry · 2026-06-26

• Integrated proteogenomic and metabolomic profiling of acute myeloid leukemias to identify molecular subtypes and associated therapy targets

  Nature Cancer · 2026-06-12 · 1 citations

• Spatial control of Keratin 8 phosphorylation by Aurora B facilitates cytokinesis in cancer cells of epithelial origin

  FEBS Journal · 2026-02-02

• MBG (Match-Between-Glycans): software and search results for "Expanding Glycopeptide Identification with Match-Between-Glycans in FragPipe"

  Zenodo (CERN European Organization for Nuclear Research) · 2026-01-01

• MBG (Match-Between-Glycans): software and search results for "Expanding Glycopeptide Identification with Match-Between-Glycans in FragPipe"

  Zenodo (CERN European Organization for Nuclear Research) · 2026-01-01

• Koina: Democratizing machine learning for proteomics research

  Nature Communications · 2025-11-11 · 8 citations

• Profiling the proteome-wide selectivity of diverse electrophiles

  Nature Chemistry · 2025-10-30 · 26 citations

• The hematopoietic stem cell MYB enhancer is essential for and recurrently amplified during T cell leukemogenesis

  Journal of Clinical Investigation · 2025-10-23

• TRAF6 integrates innate immune signals to regulate glucose homeostasis via Parkin-dependent and Parkin-independent mitophagy

  Science Advances · 2025-10-08 · 6 citations

• Breaking Boundaries in Histone Modification MS-Based Detection: A Tailored Search Strategy for Unrestricted Identification of Novel Epigenetic Marks

  Molecular & Cellular Proteomics · 2025-10-01 · 3 citations

• Integrative analysis of lung adenocarcinoma across diverse ethnicities and exposures

  Cancer Cell · 2025-07-31 · 5 citations

• A New Detailed Mass Offset Search in MSFragger for Improved Interpretation of Complex PTMsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-07-31 · 1 citations

• SynchroSep-MS: Parallel LC Separations for Multiplexed Proteomics

  Journal of the American Society for Mass Spectrometry · 2025-07-30 · 2 citations

• LONP1 regulation of mitochondrial protein folding provides insight into beta cell failure in type 2 diabetes

  Nature Metabolism · 2025-07-21 · 16 citations

• MHC1-TIP enables single-tube multimodal immunopeptidome profiling and uncovers intratumoral heterogeneity in antigen presentationPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-07-21 · 2 citations

• ProMix: Enhancing Protein Quantification through Experimental Design and Statistical Normalization

  Journal of Proteome Research · 2025-07-07

• Integrating Alternative Fragmentation Techniques into Standard LC-MS Workflows Using a Single Deep Learning Model Enhances Proteome CoveragePreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-06-01 · 1 citations

• Janus Kinase 1 (Jak1) Palmitoylation Regulates Cardiomyocyte Cytokine Receptor Trafficking and Stat3 Signaling

  Journal of Molecular and Cellular Cardiology Plus · 2025-06-01

• Analysis of isobaric quantitative proteomic data using TMT-Integrator and FragPipe computational platformPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-31 · 1 citations

• Design of Potent Small-Molecule Stimulator of Interferon Gene Inhibitor and Stimulator of Interferon Gene Mutant-Specific Degrader

  Journal of Medicinal Chemistry · 2025-05-19 · 10 citations