Alexis Battle

Johns Hopkins University

Full Professor(heuristic)

Genetic Associations and Epidemiology · Genetics

h-index62

i10-index110

Publications229

Citations25,774

Grants

20 total · 3 active

NIH #1OT2OD040418-01

Boston Birth Cohort - Autism Data Science Initiative (BBC-ADSI)

Active

Amount: $3.9M
Period: 2025-09-29 → 2028-09-28
PIs: 2
Est. capacity / PI: ~24 students

NIH #1U01HG013843-01

Statistical Methods for Characterizing Molecular Mechanisms of Human Tissue Development and Disease

Active

Amount: $1.8M
Period: 2024-09-24 → 2027-08-31
PIs: 5
Est. capacity / PI: ~2 students

Awarded at NEW YORK GENOME CENTER

NIH #5P30AG073104-05

Utilizing Technology and AI Approaches to Facilitate Independence and Resilience in Older Adults

Active

Amount: $3.9M
Period: 2021-09-30 → 2027-05-31
PIs: 4
Est. capacity / PI: ~2 students

Student capacity is a rough estimate from remaining award size, split equally among PIs. Actual funding decisions vary.

Lab Funding Health

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Institution / lab homepage Search on ResearchGate

In-Field Influence

0.0031

PageRank within Genetics co-authorship network

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Admission Signals

New paper: Beyond the baseline: mapping the context-specific regulatory landscape of disease (Trends in Genetics)2026-03-12
New preprint: Integrative multi-omic analysis identifies key transcription factors and target proteins in renal cell carcinoma and its subtypes2025-11-26
New NIH award: $3,861K — Boston Birth Cohort - Autism Data Science Initiative (BBC-ADSI)2025-09-29
New NIH award: $1,799K — Statistical Methods for Characterizing Molecular Mechanisms of Human Tissue Development and Disease2024-09-24
New NIH award: $3,948K — Utilizing Technology and AI Approaches to Facilitate Independence and Resilience in Older Adults2021-09-30

Data Freshness

Publications as of 2026-07-01
Grants as of 2026-06-30

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ORCID: 0000-0002-5287-627X

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

Potential Collaborators

Recent Publications

Last 2 years · showing 20 of 36

Beyond the baseline: mapping the context-specific regulatory landscape of disease
Trends in Genetics · 2026-03-12 · 1 citations
Genetic determinants and genomic consequences of non-leukemogenic somatic point mutations
UNC Libraries · 2025-12-17
The Histone Methyltransferase KMT2D Is a Critical Mediator of Lineage Plasticity and Therapeutic Response in Castration-Resistant Prostate Cancer
Cancer Research · 2025-12-11
Functional Genomics Link REST to Endothelial Plasticity and Atherosclerosis
Circulation Research · 2025-11-26 · 2 citations
Integrative multi-omic analysis identifies key transcription factors and target proteins in renal cell carcinoma and its subtypesPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-11-26
Leveraging and partitioning polygenic risk scores to identify cancer-related proteinsPreprint
medRxiv · 2025-11-25
Prior knowledge informs graph neural networks to improve phenotype prediction from proteomicsPreprint
medRxiv · 2025-11-25
A comparison of computational methods for expression forecasting
Genome biology · 2025-11-17 · 6 citations
Transcriptome-wide association studies at cell-state level using single-cell eQTL data
Cell Genomics · 2025-11-05
Genetic determinants and genomic consequences of non-leukemogenic somatic point mutations
Nature Communications · 2025-10-16 · 2 citations
Trans-eQTL mapping prioritises USP18 as a negative regulator of interferon response at a lupus risk locus
Nature Communications · 2025-10-02 · 5 citations
Fine-tuning sequence to function deep learning models on large-scale proteomic data improves the accuracy of variant effect predictionPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-09-27 · 1 citations
Spatiomolecular mapping reveals anatomical organization of heterogeneous cell types in the human nucleus accumbensPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-09-11
Sparse matrix factorization robust to sample sharing across GWASs reveals interpretable genetic components
The American Journal of Human Genetics · 2025-07-28
Polygenic prediction of phenotypes with a neural empirical Bayes approachPreprint
medRxiv · 2025-07-22
Aggregation of recount3 RNA-seq data improves inference of consensus and tissue-specific gene coexpression networks
Genome Research · 2025-07-17
Transcriptomic signatures of rare variant impacts across sex and the X chromosome
Human Genetics and Genomics Advances · 2025-05-31 · 2 citations
Disease-associated loci share properties with response eQTLs under common environmental exposuresPreprint
Research Square · 2025-05-14 · 1 citations
Disease-associated loci share properties with response eQTLs under common environmental exposuresPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-04
Integration of transcriptomics and long-read genomics prioritizes structural variants in rare disease
Genome Research · 2025-03-20 · 11 citations

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Alexis Battle

Grants

Boston Birth Cohort - Autism Data Science Initiative (BBC-ADSI)

Statistical Methods for Characterizing Molecular Mechanisms of Human Tissue Development and Disease

Utilizing Technology and AI Approaches to Facilitate Independence and Resilience in Older Adults

All Grants

Boston Birth Cohort - Autism Data Science Initiative (BBC-ADSI)

Statistical Methods for Characterizing Molecular Mechanisms of Human Tissue Development and Disease

Utilizing Technology and AI Approaches to Facilitate Independence and Resilience in Older Adults

Utilizing Technology and AI Approaches to Facilitate Independence and Resilience in Older Adults

Utilizing Technology and AI Approaches to Facilitate Independence and Resilience in Older Adults

Utilizing Technology and AI Approaches to Facilitate Independence and Resilience in Older Adults

Modeling the dynamicimpact of rare and common genetic variation on gene expression anddisease

Modeling the dynamicimpact of rare and common genetic variation on gene expression anddisease

Modeling the dynamicimpact of rare and common genetic variation on gene expression anddisease

Modeling the dynamicimpact of rare and common genetic variation on gene expression anddisease

Modeling the dynamic impact of rare and common genetic variation on gene expression and disease

Methods for analysis of regulatory variation in cellular differentiation

3/3 Building integrative CNS networks for genomic analysis of autism

3/3 Building integrative CNS networks for genomic analysis of autism

3/3 Building integrative CNS networks for genomic analysis of autism

3/3 Building integrative CNS networks for genomic analysis of autism

3/3 Building integrative CNS networks for genomic analysis of autism

Methods for analysis of regulatory variation in cellular differentiation

Methods for analysis of regulatory variation in cellular differentiation

Methods for analysis of regulatory variation in cellular differentiation

Career Trajectory

Research Cluster Map

Potential Collaborators

Recent Publications