Alicia Clum

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies

  Nature Microbiology · 2025-12-01 · 6 citations

• Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service (JAWS)

  2025-09-15

• Pangeneric analyses reveal the divergent genome evolution and ecologies between morels and truffles in the Morchellaceae

  Current Biology · 2025-08-05 · 5 citations

• Tetranucleotide frequencies differentiate genomic boundaries and metabolic strategies across environmental microbiomes

  mSystems · 2025-07-08

• A Comparison of the Biotechnological Potential of Marine and Terrestrial Species of Two Orders of Sordariomycete Fungi

  Marine Biotechnology · 2025-06-25 · 2 citations

• Section-level genome sequencing and comparative genomics of <i>Aspergillus</i> sections <i>Cavernicolus</i> and <i>Usti</i>

  Studies in Mycology · 2025-05-10 · 1 citations

• Y-A+S is the new Y-A-S: Updating microbial life history tradeoffs with comparative genomicsPreprint

  Research Square · 2025-05-02 · 2 citations

• Quantifying the impact of workshops promoting microbiome data standards and data stewardship

  Scientific Reports · 2025-03-22 · 1 citations

• Characterisation and comparative analysis of mitochondrial genomes of false, yellow, black and blushing morels provide insights on their structure and evolution

  IMA Fungus · 2025-02-21 · 6 citations

• Tetranucleotide frequencies differentiate genomic boundaries and metabolic strategies across environmental microbiomesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-01-21 · 1 citations

• Section-level genome sequencing and comparative genomics of Aspergillus sections Cavernicolus and Usti

  Studies in Mycology · 2025-01-01

• Comparative genomics of Aspergillus nidulans and section Nidulantes

  Current Research in Microbial Sciences · 2025-01-01 · 2 citations

• Pangeneric Analyses Reveal the Divergent Genome Evolution and Ecologies between Morels and Truffles in the MorchellaceaePreprint

  SSRN Electronic Journal · 2025-01-01

• Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 DaysPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-09-28 · 2 citations

• Standardized and accessible multi-omics bioinformatics workflows through the NMDC EDGE resource

  Computational and Structural Biotechnology Journal · 2024-09-27 · 14 citations

• Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses

  Communications Biology · 2024-09-12 · 22 citations

• Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota

  Scientific Data · 2024-09-04 · 7 citations

• From soil to sequence: filling the critical gap in genome-resolved metagenomics is essential to the future of soil microbial ecology

  Environmental Microbiome · 2024-08-02 · 38 citations

• Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation

  Journal of Fungi · 2024-07-22 · 7 citations