Ami S. Bhatt

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• A phase-variable capsule facilitates <i>Akkermansia muciniphila</i> colonization of the intestinal mucus layer

  mBio · 2026-06-18

• Transposable elements are driving rapid adaptation of Enterococcus faecium

  Nature · 2026-04-22 · 5 citations

• Participant engagement and feedback in microbiome projects: a case of AWI-Gen 2

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-04-22 · 1 citations

• Implementation of wastewater-based epidemiology in a Northern California acute care hospital: a pilot study, June–July 2024

  Journal of Hospital Infection · 2026-03-19

• Differential effects of two common GVHD prophylaxis regimens on the gut microbiome: Results from the BMT CTN 1801 study

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-02-20 · 1 citations

• A whole organism screening platform identifies gut microbiome microproteins that modulate host metabolism

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-02-12

• Impact of stopping contact precautions on <i>vanA</i> plasmid transmission, Northern California, 2021–2023

  Antimicrobial Stewardship & Healthcare Epidemiology · 2026-01-01

• Long-read metagenomics reveals phage dynamics in the human gut microbiome

  Nature · 2025-11-26 · 17 citations

• A conserved sRNA regulates mucin adhesion and gut colonization across the EnterococcaceaePreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-11-11

• Secondary graft failure after PT-cy: Modeling a candidate risk assignment biomarker based on lymphocyte reconstitution.  Results from the BMT CTN 1801 study.

  Blood · 2025-11-03

• Combined TCR-seq and single-cell RNA-seq reveal distinct origins for antiviral immunity after post-transplant cyclophosphamide and tac/MTX gvhd prophylaxis: Results from the BMT CTN 1801 study

  Blood · 2025-11-03

• A genomic atlas of the human gut virome elucidates genetic factors shaping host interactionsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-11-02 · 13 citations

• Age-related microbiome metabolites alter RNA splicing and chromatin accessibility in the brainPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-10-05 · 1 citations

• <i>Clostridium cuniculi</i> is associated with chronic high-morbidity low-mortality diarrhea in NSG and NSG-related mouse strains

  Veterinary Pathology · 2025-09-20 · 2 citations

• A peptide display system identifies a potent mutant β-melanocyte-stimulating hormone agonist of melanocortin-4 receptor

  Cell Genomics · 2025-09-11

• The prototypic crAssphage is a linear phage-plasmid

  Cell Host & Microbe · 2025-07-28 · 19 citations

• Illumina complete long read assay yields contiguous bacterial genomes from human gut metagenomes

  mSystems · 2025-07-23 · 3 citations

• Absolute quantification of prokaryotes in the microbiome by 16S rRNA qPCR or ddPCR

  Nature Protocols · 2025-05-19 · 19 citations

• Discovering Broader Host Ranges and an IS-bound Prophage Class Through Long-Read MetagenomicsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-10 · 1 citations

• Impact of posttransplant cyclophosphamide-based GVHD prophylaxis in patients 70 years and older: an update from BMT CTN 1703

  Blood Advances · 2025-04-30 · 9 citations