Angie S. Hinrichs

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Phylogenetically estimated neutral rates and fitness effects of mutations to influenza proteins

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-05-20

• ucscGenomeBrowser/kent: v497 branch

  Zenodo (CERN European Organization for Nuclear Research) · 2026-04-30

• ucscGenomeBrowser/kent: v496 branch

  Zenodo (CERN European Organization for Nuclear Research) · 2026-04-08

• Panmap: Scalable phylogeny-guided alignment, genotyping, and placement on pangenomes

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-03-30

• ucscGenomeBrowser/kent: v493 branch

  Open MIND · 2026-02-04

• ucscGenomeBrowser/kent: v492 Genome Browser Software

  Zenodo (CERN European Organization for Nuclear Research) · 2026-01-15

• The UCSC Genome Browser database: 2026 update

  Nucleic Acids Research · 2025-11-18 · 73 citations

• Real-time, multi-pathogen wastewater genomic surveillance with Freyja 2Preprint

  medRxiv · 2025-07-27 · 2 citations

• UShER-TB: Scalable, Comprehensive, Accessible Phylogenomic Analysis of <i>Mycobacterium tuberculosis</i>Preprint

  medRxiv · 2025-07-23 · 1 citations

• The mutation rate of SARS-CoV-2 is highly variable between sites and is influenced by sequence context, genomic region, and RNA structure

  Nucleic Acids Research · 2025-05-29 · 13 citations

• Referee report. For: A systematic exploration of current limitations of cognate-based phylogenetic inference [version 1; peer review: 1 approved, 1 approved with reservations]

  Faculty of 1000 Research Ltd · 2025-01-01

• The UCSC Genome Browser database: 2025 update

  Nucleic Acids Research · 2024-10-26 · 579 citations

• Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level

  Emerging infectious diseases · 2024-07-29 · 68 citations