Antonis Rokas

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Convergent evolution of aerobic fermentation through divergent mechanisms acting on the same key glycolytic genes

  2026-06-17

• Beyond Glucose: Machine Learning Identifies Genetic Determinants of Mannose Metabolism Across More Than 1,000 Yeast Species

  Zenodo (CERN European Organization for Nuclear Research) · 2026-06-11

• Beyond Glucose: Machine Learning Identifies Genetic Determinants of Mannose Metabolism Across More Than 1,000 Yeast Species

  Zenodo (CERN European Organization for Nuclear Research) · 2026-06-11

• The Origin and Early Evolution of Fungi: Challenges, Inferences, and Principles

  Annual Review of Cell and Developmental Biology · 2026-06-09

• Large-scale multi-omics profiling reveals environmental and evolutionary drivers of fungal phylogeographic and metabolic diversity

  Nature Communications · 2026-03-18

• Machine learning identifies novel signatures of antifungal drug resistance in Saccharomycotina yeasts

  PLoS Genetics · 2026-03-17

• Evidence that increased azole persistence and stress resistance precede the <i>in vivo</i> evolution of azole resistance in <i>Aspergillus fumigatus</i>

  Microbiology Spectrum · 2026-03-16 · 1 citations

• Ancient co-option of LTR retrotransposons as yeast centromeres

  Nature · 2026-02-18 · 2 citations

• Discovery of additional ancient genome duplications in yeasts

  Current Biology · 2026-01-28

• A bacterial gene acquired by parasitoid wasps contributes to venom secretion against host defence

  The EMBO Journal · 2026-01-28 · 1 citations

• An integrative chemical and genomic similarity approach linking fungal secondary metabolites and biosynthetic gene clusters

  Organic & Biomolecular Chemistry · 2026-01-01

• The macroevolution of filamentation morphology across the <i>Saccharomycotina</i> yeast subphylum

  FEMS Yeast Research · 2026-01-01

• The Macroevolution of Filamentation Morphology Across the <i>Saccharomycotina</i> Yeast SubphylumPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-11-27

• A Trait Syndrome Ties Cell Morphology to Glycolysis Across the Yeast SubphylumPreprint

  iScience · 2025-10-30

• Stable Hypermutators Revealed by the Genomic Landscape of Genes Involved in Genome Stability Among Yeast Species

  Molecular Biology and Evolution · 2025-10-29 · 2 citations

• Machine-Readable Structural Information Is Essential for Natural Products Research

  Journal of Natural Products · 2025-10-20 · 2 citations

• Population-Specific Transcriptomic Shifts Underlie Secondary Metabolic Diversification in <i>Aspergillus flavus</i> and the Domestication of <i>Aspergillus oryzae</i>Preprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-10-03 · 1 citations

• Convergent evolution of aerobic fermentation through divergent mechanisms acting on key shared glycolytic genesPreprint

  The EMBO Journal · 2025-10-02 · 2 citations

• Q &amp; A

  Current Biology · 2025-10-01

• eLife Assessment: Viral genome sequence datasets display pervasive evidence of strand-specific substitution biases that are best described using non-reversible nucleotide substitution models

  2025-09-30