Ashlee M. Earl

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• <i>Staphylococcus aureus</i> uses a eukaryotic-like uridyltransferase to make UDP-GlcNAc for cell wall synthesis

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-06-24

• Response to ‘On using clustering statistics for assessing plasmid binning tools accuracy’

  Briefings in Bioinformatics · 2026-05-01

• Single-nucleus transcriptomics illuminates sex differences during murine Escherichia coli pyelonephritis

  Communications Biology · 2026-03-31

• Mobilome of <i>Enterococcus faecalis</i> from healthy nursery pigs exposed to antibiotic pressure

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-03-27

• Supplementary Data 1-10

  Figshare · 2026-03-03 · 1 citations

• Supplementary Data 1-10

  Figshare · 2026-03-03

• Metagenomic strain tracking reveals patterns of bacterial spread and the impact of water chlorination

  medRxiv · 2026-02-11

• Loss of LafB activity reverses daptomycin resistance in <i>E. faecium</i>

  mBio · 2025-11-28 · 1 citations

• Strain sharing and persistence of microbial pathogens colonizing the skin of residents in a regional nursing home networkPreprint

  Nature Communications · 2025-11-07

• Circling in on plasmids: benchmarking plasmid detection and reconstruction tools for short-read data from diverse species

  Briefings in Bioinformatics · 2025-11-01 · 5 citations

• Single-nucleus transcriptomics illuminates sex differences during murine Escherichia coli pyelonephritisPreprint

  Research Square · 2025-10-31

• The carbapenem inoculum effect provides insights into the molecular mechanisms underlying carbapenem resistance in the Enterobacterales

  mBio · 2025-10-02 · 2 citations

• Insights Into Global Antimicrobial Resistance Dynamics Through the Sequencing of Enteric Bacteria From US International Travelers

  The Journal of Infectious Diseases · 2025-09-19 · 2 citations

• Effects of commonly used antibiotics on children’s developing gut microbiomes and resistomes in peri-urban Lima, Peru

  Journal of Antimicrobial Chemotherapy · 2025-09-09 · 1 citations

• Role of the gut microbiome in frequent gut colonization with extended-spectrum β lactamase-producing Enterobacterales among Peruvian children

  Gut Microbes · 2025-08-04 · 3 citations

• Rapid emergence of resistance to broad-spectrum direct antimicrobial activity of avibactam

  Microbiology Spectrum · 2025-06-12

• An Anaerobic Pathogen Rewires Host Metabolism to Fuel Oxidative Growth in the Inflamed GutPreprint

  Cell · 2025-05-31 · 1 citations

• Author Correction: Longitudinal profiling of low-abundance strains in microbiomes with ChronoStrain

  Nature Microbiology · 2025-05-29

• Longitudinal profiling of low-abundance strains in microbiomes with ChronoStrain

  Nature Microbiology · 2025-05-06 · 5 citations

• Contaminated drinking water facilitates Escherichia coli strain-sharing within households in urban informal settlements

  Nature Microbiology · 2025-05-01 · 20 citations