NIH #3OT2OD036435-01S2
The CFDE Workbench
- Amount
- $3.9M
- Period
- 2023-09-18 → 2028-09-17
- PIs
- 2
- Est. capacity / PI
- ~14 students
Bioinformatics and Genomic Networks · Molecular Biology
48 total · 18 active
NIH #3OT2OD036435-01S2
NIH #3OT2OD036435-01S1
NIH #1OT2OD036435-01
Student capacity is a rough estimate from remaining award size, split equally among PIs. Actual funding decisions vary.
Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.
The CFDE Workbench: Integrating Metadata and Processed Data from Common Fund Programs
Journal of Molecular Biology · 2026-01-01 · 1 citations
Antimicrobial Stewardship & Healthcare Epidemiology · 2026-01-01
Molecular signatures and signaling interactions of the hair follicle stem cell niche
Journal of Investigative Dermatology · 2025-12-16 · 1 citations
Creating an Interactive Web Interface for Networks Stored in Knowledge Graph Databases
Current Protocols · 2025-09-01 · 4 citations
The Data Distillery: A Graph Framework for Semantic Integration and Querying of Biomedical DataPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-08-15 · 3 citations
bioRxiv (Cold Spring Harbor Laboratory) · 2025-08-12 · 1 citations
Integrative analysis of lung adenocarcinoma across diverse ethnicities and exposures
Cancer Cell · 2025-07-31 · 5 citations
A Gene Set Foundation Model Pre-Trained on a Massive Collection of Diverse Gene SetsPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-06-02
L2S2: chemical perturbation and CRISPR KO LINCS L1000 signature search engine
Nucleic Acids Research · 2025-05-01 · 8 citations
Cancer Research · 2025-04-21
Cancer Research · 2025-04-21
Abstract 6290: sc2DAT: workflow for targeting tumor subpopulations of single cells
Cancer Research · 2025-04-21
Abstract 1079: L2S2: Chemical perturbation and CRISPR KO LINCS L1000 signature search engine
Cancer Research · 2025-04-21
Playbook workflow builder: Interactive construction of bioinformatics workflows
PLoS Computational Biology · 2025-04-03 · 5 citations
The CFDE Workbench: Integrating Metadata and Processed Data from Common Fund ProgramsPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-02-05 · 2 citations
lncRNAlyzr: Enrichment Analysis for lncRNA Sets
Journal of Molecular Biology · 2025-01-11 · 5 citations
GeneSetCart: assembling, augmenting, combining, visualizing, and analyzing gene sets
GigaScience · 2025-01-01 · 5 citations
sc2DAT: workflow for targeting tumor subpopulations of single cells
Bioinformatics Advances · 2024-12-26
Harmonizome 3.0: integrated knowledge about genes and proteins from diverse multi-omics resources
Nucleic Acids Research · 2024-11-20 · 118 citations
STAR Protocols · 2024-11-19