Ben Langmead

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Movi 2 release 2.0.0

  Zenodo (CERN European Organization for Nuclear Research) · 2026-03-04

• Movi 2 release 2.0.0

  Zenodo (CERN European Organization for Nuclear Research) · 2026-03-04

• Bounding the Average Move Structure Query for Faster and Smaller RLBWT Permutations

  DROPS (Schloss Dagstuhl – Leibniz Center for Informatics) · 2026-01-01

• Col-BWT: Pangenomic Seed Chaining with Maximal Matches Improves Read Classification

  Journal of Computational Biology · 2025-12-05

• Run-length compressed metagenomic read classification with SMEM-finding and tagging

  iScience · 2025-11-19

• Partitioned multi-MUM finding for scalable pangenomics with MumemtoM

  Genome Research · 2025-11-07

• Movi 2: Fast and Space-Efficient Queries on PangenomesPreprint

  Bioinformatics · 2025-10-17 · 2 citations

• Prefix-Free Parsing for Merging Big BWTs

  Lecture notes in computer science · 2025-09-21 · 1 citations

• KeBaB: k-mer Based Breaking for Finding Long MEMs

  Lecture notes in computer science · 2025-09-21 · 1 citations

• Robust 16S rRNA classification based on a compressed LCA index

  Genome Research · 2025-08-25 · 2 citations

• Large-scale RNA-Seq mining reveals ciclopirox olamine induces TDP-43 cryptic exons

  Nature Communications · 2025-07-25 · 5 citations

• Quality control of single-cell ATAC-seq data without peak calling using ChromapPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-07-18

• Fast and flexible minimizer digestion with <tt>digest</tt>

  Bioinformatics · 2025-06-20

• Mumemto: efficient maximal matching across pangenomes

  Genome biology · 2025-06-17 · 3 citations

• Accurate short-read alignment through<i>r</i>-index-based pangenome indexing

  Genome Research · 2025-06-12 · 4 citations

• Prefix-free parsing for merging big BWTsPreprint

  ArXiv.org · 2025-06-03

• Movi Color: fast and accurate long-read classification with the move structurePreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-27

• Partitioned Multi-MUM finding for scalable pangenomicsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-25

• EvANI benchmarking workflow for evolutionary distance estimation

  Briefings in Bioinformatics · 2025-05-01 · 1 citations

• IGLoo enables comprehensive analysis and assembly of immunoglobulin heavy-chain loci in lymphoblastoid cell lines using PacBio high-fidelity reads

  Cell Reports Methods · 2025-05-01 · 5 citations