Benjamin P. Berman

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Improved deconvolution of circulating tumor DNA from ultra-low-pass whole-genome methylation sequencing using CelFiE-ISH

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-04-18

• Long-read sequencing identifies aberrant fragmentation patterns linked to elevated cell-free DNA levels in cancer

  Genome biology · 2026-04-10

• Direct analysis of transcription factor protected cfDNA in plasma by ChIP-seq: Measurement of altered CTCF binding in cancer is a novel biomarker for liquid biopsyPreprint

  Research Square · 2026-03-30

• Cytokine-induced Chromatin Accessibility in Whole Blood Neutrophils Links to Sepsis Transcriptional States

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-02-05

• Profiling Cell-free DNA to Better Understand Clinical Pathologies, Immune Response and Disease Progression

  American Journal of Respiratory and Critical Care Medicine · 2025-05-01

• Chromatin changes associated with neutrophil extracellular trap formation in whole blood reflect complex immune signaling

  Frontiers in Immunology · 2025-03-04 · 3 citations

• Chromatin Changes Associated with Neutrophil Extracellular Trap (NET) Formation in Whole Blood Reflect Complex Immune SignalingPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-01-04

• Understanding the complex chromatin dynamics in primary human neutrophils during PMA-induced NET formation

  Frontiers in Immunology · 2024-10-25 · 14 citations

• Author Correction: CelFiE-ISH: a probabilistic model for multi-cell type deconvolution from single-molecule DNA methylation haplotypes

  Genome biology · 2024-07-08 · 1 citations