Bernhard Ø. Palsson

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Pangenomic decomposition reveals lineage-specific immune-evasion and virulence architectures in group A <i>Streptococcus</i>

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-05-27

• Gut microbial ethanol metabolism contributes to auto-brewery syndrome in an observational cohort

  Nature Microbiology · 2026-01-08 · 6 citations

• Approaches for accelerating microbial gene function discovery using artificial intelligence

  Nature Microbiology · 2026-01-07 · 3 citations

• Structure of the <i>Enterobacter</i> pan-genome is revealed using machine learning

  Microbiology Spectrum · 2025-12-15 · 2 citations

• Rare metabolic gene essentiality is a determinant of microniche adaptation in Eschherichia coli

  PLoS Pathogens · 2025-12-08 · 1 citations

• Deep Red Blood Cell Proteome Defines the Band 3 N-Terminus Interactome as a Regulator of Hypoxic Adaptation via BLVRB-Dependent <i>S</i> -Nitroso TransferPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-11-30

• Genetic variation of human G6PD impacts Red Blood Cell transfusion efficacyPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-11-22

• Multi-strain Analysis of <i>Pseudomonas putida</i> Reveals the Metabolic and Genetic Diversity of the SpeciesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-11-17

• Transcriptomic Profiling of scWAT Reveals Reduced Lipid-Associated Macrophage Signatures in Long-Term Endurance- and Resistance-Trained AthletesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-11-08

• Transcriptional regulatory networks of the human gut symbiont <i>Bacteroides thetaiotaomicron</i> are uncovered using machine learning

  Nucleic Acids Research · 2025-10-28 · 2 citations

• QSProteome: a community-driven interactive platform for large-scale exploration and evaluation of predicted protein complex structures

  Nucleic Acids Research · 2025-10-08 · 2 citations

• Expanding the iModulon Knowledgebase for <i>Bacillus subtilis</i> : Updated Transcriptome Decomposition Reveals Novel Regulatory MechanismsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-09-30

• Laboratory Evolution Reveals Transcriptional Mechanisms Underlying Thermal Adaptation of <i>Escherichia coli</i>

  Genome Biology and Evolution · 2025-09-30 · 6 citations

• PMkbase (version 1.0): an interactive web-based tool for tracking bacterial metabolic traits using phenotype microarrays made interoperable with sequence information and visualizing/processing PM data

  Microbiology Spectrum · 2025-09-26 · 2 citations

• Revealing Transcriptomic Responses in <i>Escherichia coli</i> During Early Antibiotic ExposurePreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-09-20

• QSProteome: A Community-Driven Interactive Platform for Large-Scale Exploration and Evaluation of Predicted Protein Complex StructuresPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-09-16 · 1 citations

• How to Utilize a Genome-Scale Metabolic Model and iModulon in the Research of Streptococcus pyogenes M1 Serotype

  2025-08-06

• Longitudinal big biological data in the AI era

  Molecular Systems Biology · 2025-08-05 · 14 citations

• Microbial production of creatine using growth-coupled selection systems

  Metabolic Engineering · 2025-07-23 · 4 citations

• CRISPRi screening reveals <i>E. coli</i> ’s anaerobic-like respiratory adaptations to gentamicin: membrane depolarization by CpxR

  mSystems · 2025-06-16 · 5 citations