Bo Wen

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Deep learning model development and clinical validation for radiographic surrogate markers of implant esthetic risk

  npj Digital Medicine · 2026-05-05

• MonoArt: Progressive Structural Reasoning for Monocular Articulated 3D Reconstruction

  ArXiv.org · 2026-03-19

• MonoArt: Progressive Structural Reasoning for Monocular Articulated 3D ReconstructionPreprint

  arXiv (Cornell University) · 2026-03-19

• DynamicVLA: A Vision-Language-Action Model for Dynamic Object Manipulation

  ArXiv.org · 2026-01-29

• DynamicVLA: A Vision-Language-Action Model for Dynamic Object ManipulationPreprint

  Open MIND · 2026-01-29

• Puget predicts gene expression across cell types using sequence and 3D chromatin organization dataPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-11-20

• Carafe enables high quality in silico spectral library generation for data-independent acquisition proteomics

  Nature Communications · 2025-11-06 · 12 citations

• Quasi-dynamic modelling and performance analysis of double-row angular contact ball bearing considering overturning moment

  European Journal of Mechanics - A/Solids · 2025-10-25 · 2 citations

• DeepMVP: deep learning models trained on high-quality data accurately predict PTM sites and variant-induced alterations

  Nature Methods · 2025-08-26 · 13 citations

• Improvements to Casanovo, a deep learning <i>de novo</i> peptide sequencerPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-07-26 · 2 citations

• A transformer model for de novo sequencing of data-independent acquisition mass spectrometry data

  Nature Methods · 2025-07-01 · 9 citations

• Intelligent Virtual Dental Implant Placement via 3D Segmentation Strategy

  Journal of Dental Research · 2025-06-23 · 6 citations

• Assessment of false discovery rate control in tandem mass spectrometry analysis using entrapment

  Nature Methods · 2025-06-16 · 36 citations

• Analysis of isobaric quantitative proteomic data using TMT-Integrator and FragPipe computational platformPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-31 · 1 citations

• 3D Scene Generation: A SurveyPreprint

  ArXiv.org · 2025-05-08 · 1 citations

• Development of PVTX-405 as a potent and highly selective molecular glue degrader of IKZF2 for cancer immunotherapy

  Nature Communications · 2025-05-01 · 17 citations

• Label-Free Quantification in the Crux ToolkitPreprint

  Journal of Proteome Research · 2025-04-24

• Open-Source and FAIR Research Software for Proteomics

  Journal of Proteome Research · 2025-04-23 · 15 citations

• Integrated gradients-based defense against adversarial word substitution attacks

  Neural Computing and Applications · 2025-04-23

• Abstract 739: Patient-derived xenografts allow deconvolution and prediction of chemotherapy responses

  Cancer Research · 2025-04-21