Brian J. Haas

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Simulated arabidopsis long read RNA-seq - LRAA benchmarking

  Zenodo (CERN European Organization for Nuclear Research) · 2026-06-17

• Simulated mouse long read RNA-seq - LRAA benchmarking

  Zenodo (CERN European Organization for Nuclear Research) · 2026-06-16

• Isoform structure, quantification predictions, and reference genome data for LRAA Benchmarking Framework

  Zenodo (CERN European Organization for Nuclear Research) · 2026-06-16

• Isoform structure, quantification predictions, and reference genome data for LRAA Benchmarking Framework

  Zenodo (CERN European Organization for Nuclear Research) · 2026-06-16

• Regulation of venom composition by the Australian funnel-web spider Hadronyche infensa is achieved via compartmentalised toxin production and venom metering

  Toxicon · 2026-02-14

• Accurate strand-specific long-read transcript isoform discovery and quantification at bulk, single-cell, and single-nucleus resolution

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-02-12

• Adrenergic signaling coordinates distant and local responses to amputation in axolotl

  Cell · 2025-10-24 · 5 citations

• Complex HPV-human DNA structures revealed by large-scale DNA analyses in an HPV-cancer derived cell linePreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-10-06

• Informatics at the Frontier of Cancer Research

  Cancer Research · 2025-07-02

• Serum, Cell-Free, HPV-Human DNA Junction Detection and HPV Typing for Predicting and Monitoring Cervical Cancer RecurrencePreprint

  eLife · 2025-06-26

• Serum, Cell-Free, HPV-Human DNA Junction Detection and HPV Typing for Predicting and Monitoring Cervical Cancer RecurrencePreprint

  eLife · 2025-06-26 · 2 citations

• TD2: finding protein coding regions in transcriptsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-04-14 · 5 citations

• De novo detection of somatic variants in high-quality long-read single-cell RNA sequencing data

  Genome Research · 2025-03-19 · 6 citations

• Accurate fusion transcript identification from long- and short-read isoform sequencing at bulk or single-cell resolution

  Genome Research · 2025-03-14 · 12 citations

• Pathogenic Viruses, Genome Integrations, and Viral::Human Chimeric Transcripts Detected by VirusIntegrationFinder Across >30k Human Tumor and Normal SamplesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-03-13 · 1 citations

• Multi-platform evaluation and optimization of single-cell RNA isoform sequencingPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-02-27 · 2 citations

• Gene Expression Shifts in Emperor Penguin Adaptation to the Extreme Antarctic Environment

  Molecular Ecology · 2024-10-17 · 5 citations

• Serum, Cell-Free, HPV-Human DNA Junction Detection and HPV Typing for Predicting and Monitoring Cervical Cancer RecurrencePreprint

  medRxiv · 2024-09-16

• Best practices to evaluate the impact of biomedical research software—metric collection beyond citations

  Bioinformatics · 2024-07-27 · 6 citations