Carl Herrmann

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 BenchmarkPreprint

  HAL (Le Centre pour la Communication Scientifique Directe) · 2026-06-04

• On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark

  ArXiv.org · 2026-06-04

• Identifying Treatment Related Signatures In Glioblastoma Using KaleidoCell

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-05-16

• Additional file 1 of scArchon: a scalable benchmarking framework for assessing single-cell perturbation models

  Figshare · 2026-05-12

• scArchon: a scalable benchmarking framework for assessing single-cell perturbation models

  Figshare · 2026-05-12

• Additional file 1 of scArchon: a scalable benchmarking framework for assessing single-cell perturbation models

  Figshare · 2026-05-12

• Additional file 2 of scArchon: a scalable benchmarking framework for assessing single-cell perturbation models

  Figshare · 2026-05-12

• Additional file 2 of scArchon: a scalable benchmarking framework for assessing single-cell perturbation models

  Figshare · 2026-05-12

• Additional file 3 of scArchon: a scalable benchmarking framework for assessing single-cell perturbation models

  Figshare · 2026-05-12

• scArchon: a scalable benchmarking framework for assessing single-cell perturbation models

  Figshare · 2026-05-12

• Additional file 3 of scArchon: a scalable benchmarking framework for assessing single-cell perturbation models

  Figshare · 2026-05-12

• scArchon: a scalable benchmarking framework for assessing single-cell perturbation models

  Genome biology · 2026-05-12 · 2 citations

• How to organise a scientific competition to benchmark methods and algorithms in computational biology?Preprint

  HAL (Le Centre pour la Communication Scientifique Directe) · 2026-01-07

• DNA methylation changes during acute COVID-19 are associated with long-term transcriptional dysregulation in patients’ airway epithelial cells

  Refubium (Universitätsbibliothek der Freien Universität Berlin) · 2026-01-01

• Hypoxia Affects Stem Cell Fate in Patient-Derived Ileum Enteroids in a HIF-1α-Dependent Manner

  Cells · 2025-12-23 · 1 citations

• The hepatitis E virus capsid protein ORF2 counteracts cell-intrinsic antiviral responses to enable persistent replication in cell culture

  PLoS Pathogens · 2025-09-22 · 6 citations

• A new IDH-independent hypermethylation phenotype is associated with astrocyte-like cell state in glioblastoma

  Genome biology · 2025-07-03 · 7 citations

• Tracking biological hallucinations in single-cell perturbation predictions using scArchon, a comprehensive benchmarking platformPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-06-27 · 1 citations

• Author Reply to Peer Reviews of The hepatitis E virus capsid protein ORF2 counteracts cell-intrinsic antiviral responses to enable persistence in hepatocytes

  2025-05-22

• DNA methylation changes during acute COVID-19 are associated with long-term transcriptional dysregulation in patients’ airway epithelial cells

  EMBO Molecular Medicine · 2025-03-21 · 4 citations