Carl Kingsford

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Data-driven AI system for learning how to run transcript assemblers

  Genome biology · 2026-05-12

• The Memory Curse: How Expanded Recall Erodes Cooperative Intent in LLM AgentsPreprint

  arXiv (Cornell University) · 2026-05-08

• The Memory Curse: How Expanded Recall Erodes Cooperative Intent in LLM Agents

  ArXiv.org · 2026-05-08

• CodonMoE: DNA language models for codon-dependent mRNA prediction

  Bioinformatics · 2026-05-05

• Why Search When You Can Transfer? Amortized Agentic Workflow Design from Structural Priors

  ArXiv.org · 2026-04-27

• Why Search When You Can Transfer? Amortized Agentic Workflow Design from Structural PriorsPreprint

  arXiv (Cornell University) · 2026-04-27

• Models Know Their Shortcuts: Deployment-Time Shortcut MitigationPreprint

  arXiv (Cornell University) · 2026-04-14

• Models Know Their Shortcuts: Deployment-Time Shortcut Mitigation

  arXiv (Cornell University) · 2026-04-14

• Turnpike with Uncertain Measurements: Triangle-Equality ILP with a Deterministic Recovery Guarantee

  ArXiv.org · 2026-03-18

• Turnpike with Uncertain Measurements: Triangle-Equality ILP with a Deterministic Recovery GuaranteePreprint

  arXiv (Cornell University) · 2026-03-18

• A multicenter phase II study of eribulin for BRAF V600E mutant metastatic colorectal cancer: the BRAVERY study (EPOC1701)

  ESMO Open · 2025-10-10

• DeepSeal: Empowering clinical researchers to analyze clinicogenomic data with an intuitive chat-based interface.

  Journal of Clinical Oncology · 2025-05-28

• A synthesis for uniformly 3-edge-connected graphs

  Discrete Applied Mathematics · 2025-02-20 · 1 citations

• Biological databases in the age of generative artificial intelligence

  Bioinformatics Advances · 2024-12-26 · 8 citations

• <i>k</i> -nonical space: sketching with reverse complements

  Bioinformatics · 2024-10-17 · 7 citations

• Approximate and Exact Optimization Algorithms for the Beltway and Turnpike Problems with Duplicated, Missing, Partially Labeled, and Uncertain Measurements

  Journal of Computational Biology · 2024-10-01

• How Much Data Is Sufficient to Learn High-Performing Algorithms?

  Journal of the ACM · 2024-07-29 · 14 citations