Full Professor(heuristic)

Biomedical Text Mining and Ontologies · Molecular Biology

Compare more Molecular Biology professors.

h-index66
i10-index181
Publications455
Citations49,389

Grants

19 total · 4 active

NSF #2239566

CAREER: Learning for Generalization in Large-Scale Cyber-Physical Systems

Active
Amount
$500K–$600K
Period
2023-09-01 → 2028-08-31
PIs
1

Awarded at Massachusetts Institute of Technology

NSF #2434399

CPS: Medium: Collaborative Research: Accelerating Societal-Scale Control Design via Offline Reinforcement Learning

Active
Amount
$400K–$500K
Period
2025-02-01 → 2028-01-31
PIs
1

Awarded at Massachusetts Institute of Technology

NIH #U24OD038424

UniProt Partnerships with Common Fund Data Ecosystem Resources for Protein-Centric Functional Genomics

Active
Amount
$1M–$2M
Period
2024-09-17 → 2027-08-31
PIs
1

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All Grants

19 total · 4 active

NSF #2239566

CAREER: Learning for Generalization in Large-Scale Cyber-Physical Systems

Active
Amount
$500K–$600K
Period
2023-09-01 → 2028-08-31
PIs
1

Awarded at Massachusetts Institute of Technology

NSF #2434399

CPS: Medium: Collaborative Research: Accelerating Societal-Scale Control Design via Offline Reinforcement Learning

Active
Amount
$400K–$500K
Period
2025-02-01 → 2028-01-31
PIs
1

Awarded at Massachusetts Institute of Technology

NIH #U24OD038424

UniProt Partnerships with Common Fund Data Ecosystem Resources for Protein-Centric Functional Genomics

Active
Amount
$1M–$2M
Period
2024-09-17 → 2027-08-31
PIs
1

NIH #T32GM142603

Graduate Training Program in Computational Biology, Bioinformatics and Biomedical Data Science (CBB)

Active
Amount
$300K–$400K
Period
2022-07-01 → 2027-06-30
PIs
3

NIH #R35GM141873

Protein Knowledge Networks and Semantic Computing for Disease Discovery

Amount
$400K–$500K
Period
2021-08-25 → 2026-07-31
PIs
1

NIH #U24HG007822

UniProt: A Protein Sequence and Function Resource for Biomedical Science

Amount
$5M–$6M
Period
2014-09-18 → 2026-05-31
PIs
3

Awarded at EUROPEAN MOLECULAR BIOLOGY LABORATORY

NSF #2149548

Collaborative Research: CPS: Medium: An Online Learning Framework for Socially Emerging Mixed Mobility

Amount
$400K–$500K
Period
2022-07-01 → 2025-06-30
PIs
1

Awarded at Massachusetts Institute of Technology

NIH #U01GM120953

Semantic Literature Annotation and Integrative Panomics Analysis for PTM-Disease Knowledge Network Discovery

Amount
$300K–$400K
Period
2016-08-05 → 2019-07-31
PIs
2

NIH #P20GM103446

Bioinformatics Core

Amount
$600K–$700K
Period
— → 2019-04-30
PIs
1

NSF #1062520

ABI Development: Integrative Bioinformatics for Knowledge Discovery of PTM Networks

Amount
$1M–$2M
Period
2011-07-01 → 2016-06-30
PIs
3

NIH #R01GM080646

PRO: A Protein Ontology in OBO Foundry for Integration of Biomedical Knowledge

Amount
$800K–$900K
Period
2007-05-01 → 2015-08-31
PIs
1

NSF #0850319

Linking Text Mining with Ontology and Systems Biology

Amount
$100K–$200K
Period
2009-09-01 → 2014-08-31
PIs
2

Awarded at Georgetown University

NSF #1242809

BIBM-2012 Travel Awards: Broadening Interdisciplinary Research and Education in Bioinformatics and Biomedicine- to be held in Philadelphia, PA, October 4 - 7, 2012

Amount
<$100K
Period
2012-09-01 → 2013-08-31
PIs
2

NIH #G08LM010720

Linking Text Mining and Data Mining for Biomedical Knowledge Discovery

Amount
$100K–$200K
Period
2010-08-19 → 2013-08-18
PIs
1

NSF #0960601

BIBM Conference: Fostering Interdisciplinary Research and Education in Bioinformatics and Biomedicine

Amount
<$100K
Period
2009-10-01 → 2010-09-30
PIs
5

NSF #0138188

Integrated Protein Classification Database System For Genomic and Proteomic Research

Amount
$400K–$500K
Period
2002-07-01 → 2005-06-30
PIs
4

Awarded at Georgetown University

NSF #9974855

PIR Classification Database for Genomic Research

Amount
$200K–$300K
Period
1999-10-01 → 2002-09-30
PIs
2

Awarded at National Biomedical Research Foundation

NSF #9808414

Database of Protein Modifications: Enhancements for Visualization, Modeling and Internet Access

Amount
$200K–$300K
Period
1998-10-01 → 2001-09-30
PIs
1

Awarded at National Biomedical Research Foundation

NIH #U54GM104941

Delaware Clinical and Translational Research ACCEL Program-BERD Core

Amount
$800K–$900K
Period
— → —
PIs
1

Recent Public Signals

  1. New paper: Pretraining effective T5 generative models for clinical and biomedical applications (PLoS ONE)2026-04-17
  2. New preprint: Measuring the State of Open Science in Transportation Using Large Language Models2026-01-20
  3. New NSF award: CPS: Medium: Collaborative Research: Accelerating Societal-Scale Control Design via Offline Reinforcement Learning2025-02-01

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Data Freshness

  • Publications as of 2026-07-09
  • Grants as of 2026-09-03

Data may not be current

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Institution / lab homepage Search on ResearchGate

ORCID: 0000-0001-6379-8601

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