Daifeng Wang

University of Wisconsin–Madison

Full Professor(heuristic)

Bioinformatics and Genomic Networks · Molecular Biology

h-index36

i10-index67

Publications177

Citations14,746

Grants

19 total · 1 active

NIH #1RF1MH128695-01A1

Machine learning analyses of single-cell multi-modal data for understanding cell-type functional genomics and gene regulation

Expiring Soon

Amount: $1.2M
Period: 2022-08-01 → 2026-07-31
PIs: 1
Est. capacity / PI: ~0 students

Awarded at UNIVERSITY OF WISCONSIN-MADISON

NIH #1R21NS128761-01

Prediction and Validation of Oligodendrocyte Gene Regulatory Network from Multi-Omics

Amount: $401K
Period: 2022-07-01 → 2025-06-30
PIs: 2
Est. capacity / PI: ~0 students

Awarded at UNIVERSITY OF WISCONSIN-MADISON

NIH #5R01AG067025-05

Understanding the molecular mechanisms that contribute to neuropsychiatric symptoms in Alzheimer Disease

Amount: $1.8M
Period: 2019-09-15 → 2025-05-31
PIs: 4
Est. capacity / PI: ~0 students

Awarded at ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI

Student capacity is a rough estimate from remaining award size, split equally among PIs. Actual funding decisions vary.

Lab Funding Health

Find elsewhere

Institution / lab homepage Search on ResearchGate

In-Field Influence

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PageRank within Molecular Biology co-authorship network

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Admission Signals

New paper: SegJointGene: joint cell segmentation and spatial gene prioritization by information entropy guided convolutional neural networks (Bioinformatics)2026-06-24
New preprint: Inferring virtual cell environments using multi-agent reinforcement learning2025-11-24
New NIH award: $1,220K — Machine learning analyses of single-cell multi-modal data for understanding cell-type functional genomics and gene regulation2022-08-01

Data Freshness

Publications as of 2026-07-01
Grants as of 2026-06-30

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ORCID: 0000-0001-9190-3704

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

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Recent Publications

Last 2 years · showing 20 of 26

SegJointGene: joint cell segmentation and spatial gene prioritization by information entropy guided convolutional neural networks
Bioinformatics · 2026-06-24
Core Algorithm of SegJointGene
Zenodo (CERN European Organization for Nuclear Research) · 2026-06-14
Large-scale, spatially resolved panoramic CRISPR screening in native tissue environments using Perturb-DBiT
Nature Biotechnology · 2026-06-11 · 1 citations
The evolution of end-to-end Vision-Language-Action (VLA) architectures in robotics
Robot learning. · 2026-04-27
Phenotype Scoring and Personalized Analysis of Population‐Scale Single‐Cell Data Dissects the Complexity of Alzheimer's Disease
Alzheimer s & Dementia · 2025-12-01
Inferring virtual cell environments using multi-agent reinforcement learningPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-11-24
Integration of Nuclear Receptors into a Schwann cell Gene Regulatory NetworkPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-10-31
Cooperative multi-view integration with a scalable and interpretable model explainer
Nature Machine Intelligence · 2025-10-21 · 1 citations
Dynamic landscapes of gene regulatory networks in early mammalian neurogenesis: Insights into brain evolution and disorder riskPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-10-08
Network-based drug repurposing for psychiatric disorders using single-cell genomics
Cell Genomics · 2025-09-23 · 5 citations
Molecular and cellular processes disrupted in the early postnatal Down syndrome prefrontal cortexPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-07-04 · 6 citations
Single‐nucleus analysis reveals oxidative stress in Down syndrome basal forebrain neurons at birth
Alzheimer s & Dementia · 2025-07-01 · 7 citations
Multimodal analyses reveal genes driving electrophysiological maturation of neurons in the primate prefrontal cortex
Neuron · 2025-05-20 · 10 citations
Spatially Resolved Panoramic in vivo CRISPR Screen via Perturb-DBiTPreprint
Research Square · 2025-05-08 · 32 citations
ARTEMIS integrates autoencoders and Schrödinger Bridges to predict continuous dynamics of gene expression, cell population, and perturbation from time-series single-cell data
Bioinformatics · 2025-04-24 · 3 citations
Single-nucleus analysis reveals oxidative stress in Down syndrome basal forebrain neurons at birthPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-02-06 · 1 citations
CoTF-reg reveals cooperative transcription factors in oligodendrocyte gene regulation using single-cell multi-omics
Communications Biology · 2025-02-05 · 3 citations
ARTEMIS integrates autoencoders and Schrödinger Bridges to predict continuous dynamics of gene expression, cell population and perturbation from time-series single-cell dataPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-01-26
Cooperative multi-view integration with Scalable and Interpretable Model ExplainerPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-01-14
NetREm: Network Regression Embeddings reveal cell-type transcription factor coordination for gene regulation
Bioinformatics Advances · 2024-12-18 · 3 citations

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Daifeng Wang

Grants

Machine learning analyses of single-cell multi-modal data for understanding cell-type functional genomics and gene regulation

Prediction and Validation of Oligodendrocyte Gene Regulatory Network from Multi-Omics

Understanding the molecular mechanisms that contribute to neuropsychiatric symptoms in Alzheimer Disease

All Grants

Machine learning analyses of single-cell multi-modal data for understanding cell-type functional genomics and gene regulation

Prediction and Validation of Oligodendrocyte Gene Regulatory Network from Multi-Omics

Understanding the molecular mechanisms that contribute to neuropsychiatric symptoms in Alzheimer Disease

Understanding the molecular mechanisms that contribute to neuropsychiatric symptoms in Alzheimer Disease

Creation of a Schwann Cell Gene Regulatory Network

Understanding the molecular mechanisms that contribute to neuropsychiatric symptoms in Alzheimer Disease

Understanding the molecular mechanisms that contribute to neuropsychiatric symptoms in Alzheimer Disease

Understanding the molecular mechanisms that contribute to neuropsychiatric symptoms in Alzheimer Disease

Understanding the molecular mechanisms that contribute to neuropsychiatric symptoms in Alzheimer Disease

Understanding the molecular mechanisms that contribute to neuropsychiatric symptoms in Alzheimer Disease

Understanding the molecular mechanisms that contribute to neuropsychiatric symptoms in Alzheimer Disease

Understanding the molecular mechanisms that contribute to neuropsychiatric symptoms in Alzheimer Disease

Understanding the molecular mechanisms that contribute to neuropsychiatric symptoms in Alzheimer Disease

Understanding the molecular mechanisms that contribute to neuropsychiatric symptoms in Alzheimer Disease

Creation of a Schwann Cell Gene Regulatory Network

Determining the neurodevelopmental cell type specific regulatory networks impacted in Down syndrome

Determining the neurodevelopmental cell type specific regulatory networks impacted in Down syndrome

A new bladder cancer model based on tissue reprogramming and gene targeting

A new bladder cancer model based on tissue reprogramming and gene targeting

Career Trajectory

Research Cluster Map

Potential Collaborators

Recent Publications