Dan Knights

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Assembly of the infant gut microbiome and resistome are linked to bacterial strains in mother's milk

  Zenodo (CERN European Organization for Nuclear Research) · 2026-02-02

• Assembly of the infant gut microbiome and resistome are linked to bacterial strains in mother’s milk

  Nature Communications · 2025-11-22 · 8 citations

• Mechanistic insights into microbiome-dependent and personalized responses to dietary fibre in a randomized controlled trialPreprint

  medRxiv · 2025-11-21

• Shared environments can facilitate microbial transmission and alter metabolic outcomes

  Gut Microbes · 2025-09-30 · 1 citations

• Gut mycobiome maturation and its determinants during early childhood: a comparison of ITS2 amplicon and shotgun metagenomic sequencing approaches

  Frontiers in Microbiology · 2025-05-21 · 4 citations

• Metagenomic source tracking after microbiota transplant therapy

  Gut Microbes · 2025-04-14 · 4 citations

• Cardiometabolic benefits of a non-industrialized-type diet are linked to gut microbiome modulation

  Cell · 2025-01-23 · 53 citations

• A Randomized Pilot Study of Time-Restricted Eating Shows Minimal Microbiome Changes

  Nutrients · 2025-01-04 · 3 citations

• Sugar-rich foods exacerbate antibiotic-induced microbiome injuryPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-10-17 · 6 citations

• Maternal oral probiotic use is associated with decreased breastmilk inflammatory markers, infant fecal microbiome variation, and altered recognition memory responses in infants—a pilot observational study

  Frontiers in Nutrition · 2024-09-25 · 9 citations

• Human milk variation is shaped by maternal genetics and impacts the infant gut microbiome

  Cell Genomics · 2024-09-11 · 27 citations

• Human cytomegalovirus in breast milk is associated with milk composition and the infant gut microbiome and growth

  Nature Communications · 2024-07-23 · 15 citations