Debora S. Marks

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Differences between protein fitness models can be used to design variants of altered specificity

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-06-14

• Determinants of metal import and specificity in a bacterial transporter

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-03-31 · 2 citations

• evedesign: accessible biosequence design with a unified framework

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-03-19 · 2 citations

• Reviewer #2 (Public review): Identifying tissue states by spatial protein patterns related to chemotherapy response in triple-negative breast cancer

  2026-01-26

• Reviewer #3 (Public review): Identifying tissue states by spatial protein patterns related to chemotherapy response in triple-negative breast cancer

  2026-01-26

• Reviewer #1 (Public review): Identifying tissue states by spatial protein patterns related to chemotherapy response in triple-negative breast cancer

  2026-01-26

• Identifying tissue states by spatial protein patterns related to chemotherapy response in triple-negative breast cancer

  eLife · 2026-01-26

• Identifying tissue states by spatial protein patterns related to chemotherapy response in triple-negative breast cancer

  eLife · 2026-01-26

• Machine learning enables efficient and effective affinity maturation of nanobodies

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-01-12 · 1 citations

• Machine learning reveals hidden dimensions of functional similarity in proteins

  Proceedings of the National Academy of Sciences · 2026-01-02 · 1 citations

• Few-shot Protein Fitness Prediction via In-context Learning and Test-time TrainingPreprint

  ArXiv.org · 2025-12-02

• Proteome-wide model for human disease genetics

  Nature Genetics · 2025-11-24 · 19 citations

• A Diffusion Model to Shrink Proteins While Maintaining Their FunctionPreprint

  ArXiv.org · 2025-11-10 · 2 citations

• Democratizing protein language model training, sharing and collaboration

  Nature Biotechnology · 2025-10-24 · 8 citations

• Kernel-Based Evaluation of Conditional Biological Sequence ModelsPreprint

  ArXiv.org · 2025-10-17

• Identifying tissue states by spatial protein patterns related to chemotherapy response in triple-negative breast cancerPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-10-07

• Pancreatic cancer risk prediction using deep sequential modeling of longitudinal diagnostic and medication records

  Cell Reports Medicine · 2025-09-01 · 1 citations

• Variant effect prediction with reliability estimation across priority virusesPreprint

  Research Square · 2025-08-28 · 1 citations

• 0939 Discovery and validation of nanobody antagonists to the itch receptor MRGPRX2 using AlphaFold-Multimer

  Journal of Investigative Dermatology · 2025-07-21

• Results of the Protein Engineering Tournament: An Open Science Benchmark for Protein Modeling and Design

  Proteins Structure Function and Bioinformatics · 2025-06-23 · 9 citations