NIH #1U01HG013760-01
Building Tools and Community to Make Pangenomes Accessible
- Amount
- $1.6M
- Period
- 2024-09-19 → 2027-08-31
- PIs
- 1
- Est. capacity / PI
- ~10 students
Awarded at UNIVERSITY OF TENNESSEE HEALTH SCI CTR
Genomics and Phylogenetic Studies · Molecular Biology
4 total · 4 active
NIH #1U01HG013760-01
Awarded at UNIVERSITY OF TENNESSEE HEALTH SCI CTR
NIH #5R01HG013017-03
Awarded at UNIVERSITY OF CALIFORNIA BERKELEY
NIH #5R01HG013017-02
Awarded at UNIVERSITY OF CALIFORNIA BERKELEY
Student capacity is a rough estimate from remaining award size, split equally among PIs. Actual funding decisions vary.
Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.
Using the linear references from the pangenome to discover missing autism variants
Nature Communications · 2026-01-23 · 3 citations
Zenodo (CERN European Organization for Nuclear Research) · 2026-01-06
Zenodo (CERN European Organization for Nuclear Research) · 2026-01-06
Origin and evolution of acrocentric chromosomes in human and great apes
bioRxiv (Cold Spring Harbor Laboratory) · 2025-12-23
Multispecies pangenomes reveal a pervasive influence of population size on structural variation
Science · 2025-12-11 · 5 citations
Scaling the PBWT for Long-Range Shared Ancestry Detection in Large Haplotype Panels
bioRxiv (Cold Spring Harbor Laboratory) · 2025-12-03
Cell Genomics · 2025-12-01
PangenomicsBench: A Benchmark Suite and Characterization of Pangenomics
2025-10-12
Chromosome-specific epigenetic control and transmission of ribosomal DNA arrays in Hominidae genomes
Cell Genomics · 2025-10-04 · 8 citations
The formation and propagation of human Robertsonian chromosomes
Nature · 2025-09-24 · 16 citations
A complete diploid human genome benchmark for personalized genomicsPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-09-21 · 21 citations
Creating a biomedical knowledge base by addressing GPT inaccurate responses and benchmarking context
Open Research Africa · 2025-09-02
The Platinum Pedigree: a long-read benchmark for genetic variants
Nature Methods · 2025-08-01 · 13 citations
Rare k-mers reveal centromere haplogroups underlying human diversity and cancer translocationsPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-07-27 · 3 citations
Accurate short-read alignment through<i>r</i>-index-based pangenome indexing
Genome Research · 2025-06-12 · 4 citations
The mouse pangenome reveals the structural complexity of the murine protein-coding landscapePreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-13 · 1 citations
Human de novo mutation rates from a four-generation pedigree reference
Nature · 2025-04-23 · 81 citations
<i>wgatools</i>: an ultrafast toolkit for manipulating whole-genome alignments
Bioinformatics · 2025-03-27 · 6 citations
bioRxiv (Cold Spring Harbor Laboratory) · 2025-02-13 · 9 citations
PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based PangenomesPreprint
Research Square · 2025-02-05 · 2 citations