Farzaneh Esmaili

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• GCP-VQVAE: A Geometry-Complete Language for Protein 3D StructurePreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-10-03

• MULoc-target: Targeting peptide classification and detection using a protein language model

  Briefings in Bioinformatics · 2025-07-01 · 1 citations

• Predicting Kinase-Specific Phosphorylation Sites with Pretrained Protein Language ModelsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-03-14

• Using Autoregressive-Transformer Model for Protein-Ligand Binding Site PredictionPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-03-13 · 1 citations

• Extending Prot2Token: Aligning Protein Language Models for Unified and Diverse Protein Prediction TasksPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-03-11 · 2 citations

• Kinase-substrate prediction using an autoregressive model

  Computational and Structural Biotechnology Journal · 2025-01-01 · 2 citations

• S‐PLM: Structure‐Aware Protein Language Model via Contrastive Learning Between Sequence and Structure

  Advanced Science · 2024-12-12 · 30 citations

• Comprehensive Evaluation of AlphaFold-Multimer, AlphaFold3 and ColabFold, and Scoring Functions in Predicting Protein-Peptide Complex StructuresPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-11-11 · 13 citations