Fengchao Yu

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Integrated proteogenomic and metabolomic profiling of acute myeloid leukemias to identify molecular subtypes and associated therapy targets

  Nature Cancer · 2026-06-12 · 1 citations

• MBG (Match-Between-Glycans): software and search results for "Expanding Glycopeptide Identification with Match-Between-Glycans in FragPipe"

  Zenodo (CERN European Organization for Nuclear Research) · 2026-01-01

• MBG (Match-Between-Glycans): software and search results for "Expanding Glycopeptide Identification with Match-Between-Glycans in FragPipe"

  Zenodo (CERN European Organization for Nuclear Research) · 2026-01-01

• Koina: Democratizing machine learning for proteomics research

  Nature Communications · 2025-11-11 · 8 citations

• Profiling the proteome-wide selectivity of diverse electrophiles

  Nature Chemistry · 2025-10-30 · 26 citations

• Breaking Boundaries in Histone Modification MS-Based Detection: A Tailored Search Strategy for Unrestricted Identification of Novel Epigenetic Marks

  Molecular & Cellular Proteomics · 2025-10-01 · 3 citations

• A New Detailed Mass Offset Search in MSFragger for Improved Interpretation of Complex PTMsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-07-31 · 1 citations

• MHC1-TIP enables single-tube multimodal immunopeptidome profiling and uncovers intratumoral heterogeneity in antigen presentationPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-07-21 · 2 citations

• Analysis of isobaric quantitative proteomic data using TMT-Integrator and FragPipe computational platformPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-31 · 1 citations

• Benchmarking SILAC Proteomics Workflows and Data Analysis Platforms

  Molecular & Cellular Proteomics · 2025-05-01 · 6 citations

• Abstract 3749: Multi-Omic Characterization of Treatment-Naive Acute Myeloid Leukemia Reveals Subtype-Specific Features and Biomarkers of Drug Response

  Cancer Research · 2025-04-21

• MSFragger-DDA+ enhances peptide identification sensitivity with full isolation window search

  Nature Communications · 2025-04-08 · 24 citations

• A modular, immunopeptidogenomic (iPepGen) analysis pipeline for discovery, verification, and prioritization of cancer peptide neoantigen candidatesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-04-08

• PepCentric Enables Fast Repository-Scale Proteogenomics SearchesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-02-28 · 3 citations

• Spatial distribution of the proteome in human body and cancersPreprint

  Nature · 2025-02-18

• diaTracer enables spectrum-centric analysis of diaPASEF proteomics data

  Nature Communications · 2025-01-02 · 27 citations

• Mapping Nanoscale‐To‐Single‐Cell Phosphoproteomic Landscape by Chip‐DIA (Adv. Sci. 1/2025)

  Advanced Science · 2025-01-01

• Chemoproteogenomic stratification of the missense variant cysteinome

  Nature Communications · 2024-10-28 · 13 citations

• MSFragger-DDA+ Enhances Peptide Identification Sensitivity with Full Isolation Window SearchPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-10-15 · 4 citations

• Mapping Nanoscale‐To‐Single‐Cell Phosphoproteomic Landscape by Chip‐DIA

  Advanced Science · 2024-10-14 · 15 citations