NIH #1R01GM155536-01A1
Development of Smoldyn
- Amount
- $317K
- Period
- 2026-05-01 → 2030-01-31
- PIs
- 1
- Est. capacity / PI
- ~5 students
Gene Regulatory Network Analysis · Molecular Biology
31 total · 5 active
NIH #1R01GM155536-01A1
NIH #5P41EB023912-08
NIH #3P41EB023912-07S1
Student capacity is a rough estimate from remaining award size, split equally among PIs. Actual funding decisions vary.
Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.
HAL (Le Centre pour la Communication Scientifique Directe) · 2026-07-01
Zenodo (CERN European Organization for Nuclear Research) · 2026-07-01
A standardized workflow for kinetic metabolic model curation and dissemination
PLoS Computational Biology · 2026-04-20
Antimony 3: Extending human-readable model definitions for SBML Level 3 Core and Packages
bioRxiv (Cold Spring Harbor Laboratory) · 2026-04-10
From FAIR to CURE: guidelines for computational models of biological systems
npj Systems Biology and Applications · 2026-03-27 · 2 citations
Zenodo (CERN European Organization for Nuclear Research) · 2025-12-05
Verification and reproducible curation of the BioModels repository
PLoS Computational Biology · 2025-12-04
A Roadmap for the Future of Systems Biology in Cancer Research
Cancer Research · 2025-10-15 · 1 citations
ratesb_python: A Python Package for Analyzing Rate Laws in Biological Models
The Journal of Open Source Software · 2025-10-10
SBMLNetwork: A framework for standards-based visualization of biochemical models
PLoS Computational Biology · 2025-09-22
Discovering subnetworks in SBML models
Bioinformatics · 2025-09-01
SBMLNetwork: a framework for standards-based visualization of biochemical modelsPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-11
Speciated evolution of oscillatory mass-action chemical reaction networksPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-04-16
Evaluating the limitations of Bayesian metabolic control analysisPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-03-27
From FAIR to CURE: Guidelines for Computational Models of Biological Systems.Preprint
PubMed · 2025-02-21 · 3 citations
Alias4SBML: A Python Package for Generating Alias Nodes in SBML ModelsPreprint
ArXiv.org · 2025-02-16 · 1 citations
Verification and reproducible curation of the BioModels repositoryPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-01-20
Systems-Level Modeling for CRISPR-Based Metabolic Engineering
ACS Synthetic Biology · 2024-08-09 · 11 citations
Generating synthetic signaling networks for in silico modeling studies
Journal of Theoretical Biology · 2024-07-14 · 4 citations