Hongkai Ji

Johns Hopkins University

Full Professor(heuristic)

Single-cell and spatial transcriptomics · Molecular Biology

h-index53

i10-index126

Publications341

Citations12,894

Grants

22 total · 6 active

NIH #5R01HG013409-02

Analytical Infrastructure for Multiple Sample Single Cell Genomic Data

Active

Amount: $361K
Period: 2024-09-01 → 2028-06-30
PIs: 1
Est. capacity / PI: ~3 students

NIH #1R01HG013409-01A1

Analytical Infrastructure for Multiple Sample Single Cell Genomic Data

Active

Amount: $361K
Period: 2024-09-01 → 2028-06-30
PIs: 1
Est. capacity / PI: ~3 students

NIH #5U01ES034983-04

Immune Development Across the Life Course: Integrating Exposures and Multi-Omics in the Boston Birth Cohort

Active

Amount: $762K
Period: 2022-09-15 → 2027-06-30
PIs: 3
Est. capacity / PI: ~0 students

Student capacity is a rough estimate from remaining award size, split equally among PIs. Actual funding decisions vary.

Lab Funding Health

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In-Field Influence

0.0004

PageRank within Molecular Biology co-authorship network

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Admission Signals

New paper: Abstract 3226: FOXA1 alterations drive endocrine therapy resistance through unique transcriptional and epigenomic programs in breast cancer (Cancer Research)2026-04-03
New NIH award: $361K — Analytical Infrastructure for Multiple Sample Single Cell Genomic Data2024-09-01
New NIH award: $361K — Analytical Infrastructure for Multiple Sample Single Cell Genomic Data2024-09-01
New NIH award: $762K — Immune Development Across the Life Course: Integrating Exposures and Multi-Omics in the Boston Birth Cohort2022-09-15
New NIH award: $783K — Immune Development Across the Life Course: Integrating Exposures and Multi-Omics in the Boston Birth Cohort2022-09-15
New NIH award: $792K — Immune Development Across the Life Course: Integrating Exposures and Multi-Omics in the Boston Birth Cohort2022-09-15
New NIH award: $822K — Immune Development Across the Life Course: Integrating Exposures and Multi-Omics in the Boston Birth Cohort2022-09-15

Data Freshness

Publications as of 2026-07-01
Grants as of 2026-06-30

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ORCID: 0000-0002-6480-0141

Career Trajectory

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Recent Publications

Last 2 years · showing 20 of 59

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Hongkai Ji

Grants

Analytical Infrastructure for Multiple Sample Single Cell Genomic Data

Analytical Infrastructure for Multiple Sample Single Cell Genomic Data

Immune Development Across the Life Course: Integrating Exposures and Multi-Omics in the Boston Birth Cohort

All Grants

Analytical Infrastructure for Multiple Sample Single Cell Genomic Data

Analytical Infrastructure for Multiple Sample Single Cell Genomic Data

Immune Development Across the Life Course: Integrating Exposures and Multi-Omics in the Boston Birth Cohort

Immune Development Across the Life Course: Integrating Exposures and Multi-Omics in the Boston Birth Cohort

Immune Development Across the Life Course: Integrating Exposures and Multi-Omics in the Boston Birth Cohort

Immune Development Across the Life Course: Integrating Exposures and Multi-Omics in the Boston Birth Cohort

Computational tools for regulome mapping using single-cell genomic data

Big Data Methods for Decoding Gene Regulation

Computational tools for regulome mapping using single-cell genomic data

Computational tools for regulome mapping using single-cell genomic data

Computational tools for regulome mapping using single-cell genomic data

Big Data Methods for Decoding Gene Regulation

Big Data Methods for Decoding Gene Regulation

Big Data Methods for Decoding Gene Regulation

Computational Tools for Mining Large Amounts of ChIP and Gene Expression Data

Computational Tools for Mining Large Amounts of ChIP and Gene Expression Data

Computational Tools for Mining Large Amounts of ChIP and Gene Expression Data

Computational Tools for Mining Large Amounts of ChIP and Gene Expression Data

Statistical and Computational Tools for Next-generation ChIP-seq Applications

Computational Tools for Mining Large Amounts of ChIP and Gene Expression Data

Statistical and Computational Tools for Next-generation ChIP-seq Applications

Statistical and Computational Tools for Next-generation ChIP-seq Applications

Career Trajectory

Research Cluster Map

Potential Collaborators

Recent Publications