Jake Y. Chen

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• SVC-Probe: A Framework for Evaluating Perturbation Generalization in Spatial Foundation-Model Embeddings

  Zenodo (CERN European Organization for Nuclear Research) · 2026-06-26

• SVC-Probe: A Framework for Evaluating Perturbation Generalization in Spatial Foundation-Model Embeddings

  Zenodo (CERN European Organization for Nuclear Research) · 2026-06-26

• HPA Dashboard: A Reusable Imaging Workflow Package with an Auto-Research Training Agent

  Zenodo (CERN European Organization for Nuclear Research) · 2026-06-22

• GOLDEN fusion: a graph-oriented learning with domain-embedding network fusion for generating super gene sets in functional genomics

  Briefings in Bioinformatics · 2026-05-01

• The Common Fund Data Ecosystem (CFDE)

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-04-12

• Design, synthesis and evaluation of novel BRD4 and RIPK3 dual inhibitors as potential anti-inflammatory agents and antidotes for arsenicals

  Bioorganic & Medicinal Chemistry Letters · 2026-04-09

• Research Code Sharing in Support of Gold Standard Science.

  UNC Libraries · 2026-03-17

• Research Code Sharing in Support of Gold Standard Science

  Journal of Diabetes Science and Technology · 2026-01-14 · 2 citations

• Design, Synthesis and Evaluation of Novel BRD4 and RIPK3 Dual Inhibitors as Potential Anti-inflammatory Agents and Antidotes for ArsenicalsPreprint

  SSRN Electronic Journal · 2026-01-01

• Shaping the glioblastoma microenvironment to enhance CAR-NK immunotherapy

  Frontiers in Immunology · 2025-12-01 · 1 citations

• BioRSP: Angular Scanning for Directional Gene Expression Enrichment in Single-Cell Embeddings

  2025-10-12

• Interactive Graph Visualization and Teaming Recommendation in an Interdisciplinary Project's Talent Knowledge Graph

  Proceedings of the Association for Information Science and Technology · 2025-10-01 · 1 citations

• GETgene-AI: a framework for prioritizing actionable cancer drug targets

  Frontiers in Systems Biology · 2025-09-29 · 1 citations

• Targeting west nile virus replication by xanthine inhibitors

  Medicinal Chemistry Research · 2025-09-26 · 1 citations

• Integrative Genomics and Phenotypic Profiling Reveal <i>Lacticplantibacillus plantarum</i> <scp>BGI</scp> ‐ <scp>N6</scp> as a Multifunctional Candidate for Dermatological Probiotic Development

  The FASEB Journal · 2025-09-02 · 1 citations

• 24 ^th International Workshop on Data Mining in Bioinformatics (BIOKDD 2025)

  2025-08-03

• NeSyDPP-4: discovering DPP-4 inhibitors for diabetes treatment with a neuro-symbolic AI approach

  Frontiers in Bioinformatics · 2025-07-21 · 2 citations

• hERG-LTN: A New Paradigm for hERG Cardiotoxicity Prediction Using Neuro-Symbolic and Generative AI

  2025-07-14 · 1 citations

• High-throughput screening for the identification of dual inhibitors of BRD4 and RIPK3 toward the development of small-molecule medical countermeasure agents against arsenicals

  SLAS DISCOVERY · 2025-07-02 · 2 citations

• AI-driven network biology identifies SRC as a therapeutic target in metastatic pancreatic adenocarcinoma

  Intelligent Oncology · 2025-07-01 · 1 citations