James J. Collins

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Deep learning–enabled discovery of antibiotics effective against <i>Neisseria gonorrhoeae</i>

  Science Translational Medicine · 2026-06-17 · 1 citations

• Genetic code expansion enables programmable covalent protein design

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-05-16

• Reversing transgene silencing via targeted chromatin editingPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-10-30 · 1 citations

• Active learning framework leveraging transcriptomics identifies modulators of disease phenotypes

  Science · 2025-10-23 · 26 citations

• Convergence of nanotechnology and CRISPR-based diagnostics

  Nature Nanotechnology · 2025-10-01 · 13 citations

• The Bionic Interface: Considering the Material Mediated Electrical Stimulation of Stem Cells

  Advanced Materials · 2025-09-29 · 3 citations

• Mitigating antimicrobial resistance by innovative solutions in AI (MARISA): a modified James Lind Alliance analysis

  npj Antimicrobials and Resistance · 2025-09-01 · 5 citations

• Loss of vitamin C biosynthesis protects from a parasitic infectionPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-07-26 · 2 citations

• Essay: Using Machine Learning for Antibiotic Discovery

  Physical Review Letters · 2025-07-15 · 8 citations

• Optogenetics-enabled discovery of integrated stress response modulators

  Cell · 2025-07-15 · 14 citations

• Mitigating Antimicrobial Resistance by Innovative Solutions in AI (MARISA): a modified James Lind Alliance AnalysisPreprint

  Research Square · 2025-06-06

• Associations between internal and external training load measures and neuromuscular performance in elite soccer players

  Sport Sciences for Health · 2025-03-18 · 3 citations

• Engineering synthetic phosphorylation signaling networks in human cells

  Science · 2025-01-02 · 26 citations

• An explainable deep learning platform for molecular discovery

  Nature Protocols · 2024-12-09 · 22 citations

• Accurate RNA 3D structure prediction using a language model-based deep learning approach

  Nature Methods · 2024-11-21 · 192 citations

• Catalase activity deficiency sensitizes multidrug-resistant Mycobacterium tuberculosis to the ATP synthase inhibitor bedaquiline

  Nature Communications · 2024-11-13 · 19 citations

• Deep generative design of RNA aptamers using structural predictions

  Nature Computational Science · 2024-11-06 · 72 citations

• UROPOT: study protocol for a randomized, double-blind phase I/II trial for metabolism-based potentiation of antimicrobial prophylaxis in the urological tract

  Trials · 2024-10-15 · 4 citations

• Customizable gene sensing and response without altering endogenous coding sequences

  Nature Chemical Biology · 2024-09-12 · 5 citations

• Rapid discovery and evolution of nanosensors containing fluorogenic amino acids

  Nature Communications · 2024-09-05 · 9 citations