James P. Balhoff

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• The Cell Ontology in the age of single-cell omicsPreprint

  Scientific Data · 2026-04-24

• Mondo: integrating disease terminology across communities

  Genetics · 2025-10-06 · 14 citations

• Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems

  UNC Libraries · 2025-08-19

• KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response

  UNC Libraries · 2025-06-28

• BioCLIP 2: Emergent Properties from Scaling Hierarchical Contrastive LearningPreprint

  ArXiv.org · 2025-05-29

• The Vertebrate Breed Ontology: Toward Effective Breed Data Standardization

  Journal of Veterinary Internal Medicine · 2025-05-25 · 2 citations

• The Unified Phenotype Ontology : a framework for cross-species integrative phenomics

  Genetics · 2025-03-01 · 10 citations

• A compendium of human gene functions derived from evolutionary modelling

  Nature · 2025-02-26 · 34 citations

• A general strategy for generating expert-guided, simplified views of ontologiesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-12-18 · 5 citations

• Hierarchical Conditioning of Diffusion Models Using Tree-of-Life for Studying Species Evolution

  Lecture notes in computer science · 2024-11-24 · 2 citations

• The Unified Phenotype Ontology (uPheno): A framework for cross-species integrative phenomicsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-09-22 · 3 citations

• VLM4Bio: A Benchmark Dataset to Evaluate Pretrained Vision-Language Models for Trait Discovery from Biological ImagesPreprint

  arXiv (Cornell University) · 2024-08-28 · 2 citations

• Hierarchical Conditioning of Diffusion Models Using Tree-of-Life for Studying Species EvolutionPreprint

  arXiv (Cornell University) · 2024-07-31