James T. Yurkovich

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• A framework towards digital twins for type 2 diabetes

  Frontiers in Digital Health · 2024-01-26 · 36 citations

• Is the kinetome conserved?

  Molecular Systems Biology · 2022-02-01 · 21 citations

• <i>Escherichia coli</i> Data-Driven Strain Design Using Aggregated Adaptive Laboratory Evolution Mutational Data

  ACS Synthetic Biology · 2021-11-11 · 15 citations

• Unraveling the functions of uncharacterized transcription factors in <i>Escherichia coli</i> using ChIP-exo

  Nucleic Acids Research · 2021-08-11 · 55 citations

• Data-Driven Strain Design Using Aggregated Adaptive Laboratory Evolution Mutational DataPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2021-07-20

• Unraveling the functions of uncharacterized transcription factors in <i>Escherichia coli</i> using ChIP-exoPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2021-06-11

• Intricate Genetic Programs Controlling Dormancy in Mycobacterium tuberculosis

  Cell Reports · 2021-06-01 · 3 citations

• The quantitative metabolome is shaped by abiotic constraints

  Nature Communications · 2021-05-26 · 22 citations

• MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics

  PLoS Computational Biology · 2021-01-28 · 45 citations

• Metabolic Network Analysis Reveals Altered Bile Acid Synthesis and Metabolism in Alzheimer’s Disease

  Cell Reports Medicine · 2020-11-01 · 210 citations

• The quantitative metabolome is shaped by abiotic constraintsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2020-09-27 · 1 citations

• MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kineticsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2020-07-31 · 3 citations

• Causal mutations from adaptive laboratory evolution are outlined by multiple scales of genome annotations and condition-specificity

  BMC Genomics · 2020-07-25 · 39 citations

• Synthesizing Systems Biology Knowledge from Omics Using Genome‐Scale Models

  PROTEOMICS · 2020-06-24 · 48 citations

• Intricate Genetic Programs Controlling Dormancy in Mycobacterium tuberculosis

  Cell Reports · 2020-04-01 · 42 citations

• Metabolic Network Analysis Reveals Altered Bile Acid Synthesis and Cholesterol Metabolism in Alzheimer’s Disease

  SSRN Electronic Journal · 2020-01-01 · 14 citations