Jason A. Papin

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Genome-scale metabolic modelling identifies vaginal microbiome members as potential probiotics

  Nature Microbiology · 2026-06-12

• Soil bacterium <i>Massilia</i> secretes metabolites that promote <i>Leptospira</i> growth

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-04-07

• Enzyme-enhanced RNA isolation from biofilm-producing bacteria

  Microbiology Spectrum · 2026-02-27

• Metabolic network analysis of Crohn’s disease reveals sex- and age-specific cellular phenotypes

  Cell Systems · 2026-01-30

• Automated Approaches for the Development of Genome‐Scale Metabolic Network Models

  2026-01-09

• Stool Sphingomyelins as Biomarkers of Cholestasis and Inflammation in Very-low-birth Weight Neonates: A Cohort Study

  Journal of Clinical Neonatology · 2026-01-01

• Characterizing Spatiotemporal Expansion of <i>Pseudomonas aeruginosa</i> Communities in Polymer and Mucin Gel Environments

  Biotechnology and Bioengineering · 2025-11-13

• Metabolic network analysis of Crohn’s disease reveals sex- and age-specific cellular phenotypes

  Cell Systems · 2025-11-01

• Characterizing  spatiotemporal expansion of  Pseudomonas  aeruginosa communities in polymer and  mucin gel environments 

  2025-10-13

• Ten simple rules for developing a training program

  PLoS Computational Biology · 2025-07-11

• A systems biology approach to evaluate potential probiotic candidates for women’s vaginal healthPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-06-21

• Reframing the role of the objective function in its proper context for metabolic network modeling

  Cell Systems · 2025-06-01 · 7 citations

• Genome-scale metabolic network reconstruction analysis identifies bacterial vaginosis-associated metabolic interactions

  Nature Communications · 2025-05-22 · 4 citations

• Modeling spatiotemporal expansion of Pseudomonas aeruginosa communities within mucin gel mimetic environmentsPreprint

  2025-04-16

• Ten simple rules for good model-sharing practices

  PLoS Computational Biology · 2025-01-10 · 7 citations

• Improvement in the prediction power of an astrocyte genome-scale metabolic model using multi-omic data

  Frontiers in Systems Biology · 2025-01-03 · 2 citations

• Metabolic Network Analysis of Crohn's Disease Reveals Sex- and Age-Specific Cellular PhenotypesPreprint

  SSRN Electronic Journal · 2025-01-01

• Applying a polysaccharide lyase from <i>Stenotrophomonas maltophilia</i> to disrupt alginate exopolysaccharide produced by <i>Pseudomonas aeruginosa</i> clinical isolates

  Applied and Environmental Microbiology · 2024-12-13 · 11 citations

• Niche-specific metabolic phenotypes can be used to identify antimicrobial targets in pathogens

  PLoS Biology · 2024-11-18 · 5 citations

• FROG Analysis Ensures the Reproducibility of Genome Scale Metabolic ModelsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-09-26 · 11 citations