Jeffrey A. Bilmes

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Author Correction: Epiphany: predicting Hi-C contact maps from 1D epigenomic signals

  Genome biology · 2024-05-23

• Epiphany: predicting Hi-C contact maps from 1D epigenomic signals

  Genome biology · 2023-06-06 · 54 citations

• Epiphany model files

  Zenodo (CERN European Organization for Nuclear Research) · 2023-04-03

• Epiphany model files

  Zenodo (CERN European Organization for Nuclear Research) · 2023-04-03

• MS1Connect: a mass spectrometry run similarity measure

  Bioinformatics · 2023-01-24 · 1 citations

• Linking cells across single-cell modalities by synergistic matching of neighborhood structure

  Bioinformatics · 2022-08-24 · 4 citations

• A learned embedding for efficient joint analysis of millions of mass spectra

  Nature Methods · 2022-05-30 · 64 citations

• Linking cells across single-cell modalities by synergistic matching of neighborhood structurePreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2022-04-21

• MS1Connect: a mass spectrometry run similarity measurePreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2022-01-14

• Epiphany: predicting Hi-C contact maps from 1D epigenomic signalsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2021-12-03 · 10 citations

• Author Correction: Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome

  Genome biology · 2021-09-03 · 2 citations

• A pitfall for machine learning methods aiming to predict across cell types

  Genome biology · 2020-11-19 · 56 citations

• Submodular sketches of single-cell RNA-seq measurements

  2020-09-21 · 4 citations

• Avocado

  2020-09-21 · 1 citations

• Prioritizing transcriptomic and epigenomic experiments using an optimization strategy that leverages imputed data

  Bioinformatics · 2020-09-09 · 3 citations

• Submodular sketches of single-cell RNA-seq measurementsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2020-05-03 · 2 citations

• Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome

  Genome biology · 2020-03-30 · 133 citations

• Completing the ENCODE3 compendium yields accurate imputations across a variety of assays and human biosamples

  Genome biology · 2020-03-30 · 47 citations

• Additional file 3 of Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome

  Open MIND · 2020-01-01

• apricot: Submodular selection for data summarization in Python

  arXiv (Cornell University) · 2020-01-01 · 3 citations