Jian Ma

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Germline hypomethylation shapes dynamic CpG reservoirs in ape genomes

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-06-19

• An integrated view of the structure and function of the human 4D nucleome

  Nature · 2025-12-17 · 28 citations

• The IGVF catalog—from genetic variation to function

  Nucleic Acids Research · 2025-12-08 · 3 citations

• MIMYR: Generative modeling of missing tissue in spatial transcriptomicsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-11-27 · 1 citations

• TissueNarrator: Generative Modeling of Spatial Transcriptomics with Large Language ModelsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-11-27

• DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks

  Nature Communications · 2025-11-18 · 2 citations

• Unified integration of spatial transcriptomics across platforms with LLOKIPreprint

  Genome Research · 2025-11-13 · 1 citations

• HEIMDALL: Disentangling tokenizer design for robust transfer in single-cell foundation modelsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-11-10 · 2 citations

• Chronic respiratory diseases risk during the COVID-19 pandemic: an integrated modelling approach based on hospital records across 30 countries

  Population Health Metrics · 2025-11-06

• AndesVL Technical Report: An Efficient Mobile-side Multimodal Large Language ModelPreprint

  ArXiv.org · 2025-10-13

• Vision-Language Guided Semantic Diffusion Sampling for Small Object Detection in Remote Sensing Imagery

  Remote Sensing · 2025-09-17 · 2 citations

• LFSA‐YOLOv7: A Novel Method for Ship Detection in Remote Sensing Images with Complex Backgrounds

  Photogrammetric Engineering & Remote Sensing · 2025-09-01

• Serum Myoglobin After Cardiac Surgery Predicts Postoperative Cardiogenic Shock Requiring Mechanical Circulatory Support Within 14 Days

  Shock · 2025-07-28

• DANCE 2.0: Transforming single-cell analysis from black box to transparent workflowPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-07-22

• Eucommia ulmoides and its inhibitory effects on prevotella in piglet gut microbiome through metagenomic and metabolomic analysis

  Animal Biotechnology · 2025-06-10

• O-090 Advancing embryo selection: combined DNA and RNA analysis in PGT

  Human Reproduction · 2025-06-01

• EYKTHYR reveals transcriptional regulators of spatial gene programsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-23

• Popari: Modeling multisample variation in spatial transcriptomicsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-13 · 2 citations

• Author response: Major nuclear locales define nuclear genome organization and function beyond A and B compartments

  2025-04-25

• Steamboat: Attention-based multiscale delineation of cellular interactions in tissuesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-04-10 · 4 citations