Full Professor(heuristic)

Cancer Genomics and Diagnostics · Cancer Research

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h-index85
i10-index146
Publications481
Citations227,347

Grants

18 total · 3 active

NIH #P30CA023100

Structural and Functional Genomics Program

Active
Amount
<$100K
Period
1996-07-01 → 2031-04-30
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #U24CA295532

The Molecular Signatures Database: A knowledgebase for gene set based analysis of genomic data

Active
Amount
$600K–$700K
Period
2025-04-01 → 2030-03-31
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #U24CA264379

Software and algorithms for elucidating the structure, function, and evolution of extrachromosomal DNA

Active
Amount
$700K–$800K
Period
2021-09-01 → 2027-08-31
PIs
2

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

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All Grants

18 total · 3 active

NIH #P30CA023100

Structural and Functional Genomics Program

Active
Amount
<$100K
Period
1996-07-01 → 2031-04-30
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #U24CA295532

The Molecular Signatures Database: A knowledgebase for gene set based analysis of genomic data

Active
Amount
$600K–$700K
Period
2025-04-01 → 2030-03-31
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #U24CA264379

Software and algorithms for elucidating the structure, function, and evolution of extrachromosomal DNA

Active
Amount
$700K–$800K
Period
2021-09-01 → 2027-08-31
PIs
2

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #U24CA258406

The Integrative Genomics Viewer (IGV) for Cancer Research

Amount
$900K–$1000K
Period
2021-09-07 → 2026-08-31
PIs
2

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #U01CA253547

Identifying therapeutic pathways targeting medulloblastoma-immune cell interactions

Amount
$600K–$700K
Period
2021-05-01 → 2026-04-30
PIs
2

Awarded at MASSACHUSETTS INSTITUTE OF TECHNOLOGY

NIH #U24CA248457

GenePattern and GenePattern Notebook: Integrative 'Omic Analysis for Cancer Research

Amount
$900K–$1000K
Period
2020-06-01 → 2025-05-31
PIs
2

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #U24CA220341

Supporting and evolving Gene Set Enrichment Analysis and the Molecular Signatures Database for cancer research

Amount
$700K–$800K
Period
2018-05-01 → 2023-04-30
PIs
2

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #U01CA217885

A Rational Systematic Approach to Find Combinations of Pharmacologic and Immune Therapies that Target Identifiable Oncogenic States

Amount
$1M–$2M
Period
2017-09-12 → 2022-07-31
PIs
4

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #U24CA210004

The Integrative Genomics Viewer (IGV): visualization supporting cancer research

Amount
$700K–$800K
Period
2016-09-01 → 2021-08-31
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #U01CA184898

Embryonal Brain Tumor Networks

Amount
$600K–$700K
Period
2014-07-01 → 2020-05-31
PIs
3

Awarded at MASSACHUSETTS INSTITUTE OF TECHNOLOGY

NIH #U24CA194107

GenePattern Notebooks for Cancer Research

Amount
$500K–$600K
Period
2015-04-01 → 2020-03-31
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #R01GM074024

Supporting Integrative Genomic Analysis Users with GenePattern

Amount
$400K–$500K
Period
2005-06-01 → 2019-11-30
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #R01CA121941

Knowledge-based Gene Expression Analysis for Biomedical and Cancer Research

Amount
$400K–$500K
Period
2006-08-01 → 2018-04-30
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #U41HG007517

GenomeSpace: community web environment for analysis across diverse genomic tools

Amount
$1M–$2M
Period
2014-03-17 → 2018-02-28
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NSF #9318771

Mathematical Sciences: Development and Implementation of Parallel Algorithms for Protein Inverse Folding Problem

Amount
<$100K
Period
1994-09-01 → 1996-08-31
PIs
4

Awarded at Thinking Machines Corporation

NSF #9318760

Mathematical Sciences: Massively Parallel Monte Carlo Simulation of Positron Emission Tomography for Scatter Correction

Amount
<$100K
Period
1994-09-01 → 1996-08-31
PIs
5

Awarded at Thinking Machines Corporation

NSF #9016703

Mathematical Sciences: NSF/AWM Workshops to Encourage and Support Young Women Mathematicians

Amount
<$100K
Period
1990-09-15 → 1993-02-28
PIs
2

Awarded at Association for Women in Mathematics, Inc.

NSF #8417900

International Congress of Mathematicians, Berkeley, California, August 3-11, 1986

Amount
$200K–$300K
Period
1984-11-15 → 1987-04-30
PIs
1

Awarded at American Mathematical Society

Recent Public Signals

  1. New paper: Supplementary Figure 1 from Phase IB/II Trial with Correlative Analyses of Doxorubicin plus Durvalumab Combination in Patients with Advanced Soft Tissue Sarcoma2026-06-17
  2. New preprint: igv-reports: Embedding interactive genomic visualizations in HTML reports to aid variant review2025-10-31
  3. New NIH award: The Molecular Signatures Database: A knowledgebase for gene set based analysis of genomic data2025-04-01

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Data Freshness

  • Publications as of 2026-07-09
  • Grants as of 2026-09-03

Data may not be current

Find elsewhere

Institution / lab homepage Search on ResearchGate

ORCID: 0000-0002-9755-2818

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