John Erol Evangelista

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• ChEA-KG and ChEA-KG-TS: a network-based transcription factor enrichment analysis tool with an accompanying time-series workflow

  Nucleic Acids Research · 2026-05-08

• The Common Fund Data Ecosystem (CFDE)

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-04-12

• The CFDE Workbench: Integrating Metadata and Processed Data from Common Fund Programs

  Journal of Molecular Biology · 2026-01-01 · 1 citations

• Creating an Interactive Web Interface for Networks Stored in Knowledge Graph Databases

  Current Protocols · 2025-09-01 · 4 citations

• The Data Distillery: A Graph Framework for Semantic Integration and Querying of Biomedical DataPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-08-15 · 3 citations

• ChEA-KG: Human Transcription Factor Regulatory Network with a Knowledge Graph Interactive User InterfacePreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-08-12 · 1 citations

• L2S2: chemical perturbation and CRISPR KO LINCS L1000 signature search engine

  Nucleic Acids Research · 2025-05-01 · 8 citations

• Abstract 1079: L2S2: Chemical perturbation and CRISPR KO LINCS L1000 signature search engine

  Cancer Research · 2025-04-21

• Abstract 6305: hGRN-ChEAR: human transcription factor regulatory network with a knowledge graph interactive user interface

  Cancer Research · 2025-04-21

• Playbook workflow builder: Interactive construction of bioinformatics workflows

  PLoS Computational Biology · 2025-04-03 · 5 citations

• The CFDE Workbench: Integrating Metadata and Processed Data from Common Fund ProgramsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-02-05 · 2 citations

• lncRNAlyzr: Enrichment Analysis for lncRNA Sets

  Journal of Molecular Biology · 2025-01-11 · 5 citations

• GeneSetCart: assembling, augmenting, combining, visualizing, and analyzing gene sets

  GigaScience · 2025-01-01 · 5 citations

• Harmonizome 3.0: integrated knowledge about genes and proteins from diverse multi-omics resources

  Nucleic Acids Research · 2024-11-20 · 118 citations