John Huddleston

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Nextstrain automates real-time phylodynamic analysis of open data for endemic and emerging pathogens

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-03-26

• Seasonal influenza circulation patterns and projections for February 2026 to February 2027

  Zenodo (CERN European Organization for Nuclear Research) · 2026-03-05

• Seasonal influenza circulation patterns and projections for February 2026 to February 2027

  Zenodo (CERN European Organization for Nuclear Research) · 2026-03-05

• nextstrain/nextclade_data: 2026-03-04--12-40-26Z

  Zenodo (CERN European Organization for Nuclear Research) · 2026-03-04

• High-throughput neutralization measurements correlate strongly with evolutionary success of human influenza strains

  eLife · 2026-02-23 · 3 citations

• Strain-specific differences in the response to egg-derived versus recombinant protein influenza vaccines

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-02-23

• Author response: High-throughput neutralization measurements correlate strongly with evolutionary success of human influenza strains

  2026-02-23

• Near real-time data on the human neutralizing antibody landscape to influenza virus as of early 2026 to inform vaccine-strain selection

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-02-19 · 1 citations

• Nomenclature for Tracking of Genetic Variation of Seasonal Influenza Viruses

  Influenza and Other Respiratory Viruses · 2026-02-01 · 5 citations

• Reviewer #1 (Public review): High-throughput neutralization measurements correlate strongly with evolutionary success of human influenza strains

  2026-01-28

• Author response: High-throughput neutralization measurements correlate strongly with evolutionary success of human influenza strains

  2026-01-28

• Reviewer #2 (Public review): High-throughput neutralization measurements correlate strongly with evolutionary success of human influenza strains

  2026-01-28

• High-throughput neutralization measurements correlate strongly with evolutionary success of human influenza strains

  eLife · 2026-01-28

• antigen-prime: Simulating coupled genetic and antigenic evolution of influenza virus

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-01-25

• nextstrain/nextclade_data: 2026-01-14--08-53-00Z

  Zenodo (CERN European Organization for Nuclear Research) · 2026-01-14

• nextstrain/nextclade_data: 2026-01-06--14-59-32Z

  Zenodo (CERN European Organization for Nuclear Research) · 2026-01-06

• Nomenclature for tracking of genetic variation of seasonal influenza viruses

  medRxiv · 2025-12-08 · 1 citations

• Author response: Timely vaccine strain selection and genomic surveillance improve evolutionary forecast accuracy of seasonal influenza A/H3N2

  2025-12-04

• Author response: High-throughput neutralization measurements correlate strongly with evolutionary success of human influenza strains

  2025-11-27

• High-throughput neutralization measurements correlate strongly with evolutionary success of human influenza strainsPreprint

  eLife · 2025-11-27 · 1 citations