Jonathan Warrell

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Transcriptomic and phenotypic convergence of neurodevelopmental disorder risk genes in vitro and in vivo

  Nature Neuroscience · 2026-04-24 · 1 citations

• Interpretability and implicit model semantics in biomedicine and deep learning

  Nature Machine Intelligence · 2026-03-23

• A Single-Cell Spatially-Resolved Human Whole Transcriptome Atlas of Non-Small Cell Lung Cancer (NSCLC)

  Zenodo (CERN European Organization for Nuclear Research) · 2026-03-05

• A Single-Cell Spatially-Resolved Human Whole Transcriptome Atlas of Non-Small Cell Lung Cancer (NSCLC)

  Open MIND · 2026-03-05

• Generative AI-Guided Design of High-Affinity T Cell Receptors

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-02-12

• Logical Guidance for the Exact Composition of Diffusion Models

  arXiv (Cornell University) · 2026-02-05

• Logical Guidance for the Exact Composition of Diffusion ModelsPreprint

  Open MIND · 2026-02-05

• Metabolic characterization of tumor-immune interactions by multiplexed immunofluorescence reveals spatial mechanisms of immunotherapy response in non-small cell lung carcinoma (NSCLC)

  Nature Communications · 2026-02-03 · 2 citations

• 515 Tumor agnostic spatially defined immune cell gene signatures predict immunotherapy outcomes

  Regular and Young Investigator Award Abstracts · 2025-11-01

• 453 Colocalization of PD-1 and PD-L1 in the tumor compartment predicts checkpoint inhibitor response in melanomas

  Regular and Young Investigator Award Abstracts · 2025-11-01

• Spatial signatures for predicting immunotherapy outcomes using multi-omics in non-small cell lung cancer

  Nature Genetics · 2025-10-01 · 30 citations

• Efficient Privacy-Preserving Training of Quantum Neural Networks by Using Mixed States to Represent Input Data EnsemblesPreprint

  ArXiv.org · 2025-09-15

• Dynamic convergence of neurodevelopment disorder risk genes: zebrafish baseline and drug behavioral screen dataset

  Zenodo (CERN European Organization for Nuclear Research) · 2025-07-16

• Dynamic convergence of neurodevelopment disorder risk genes: zebrafish baseline and drug behavioral screen dataset

  Open MIND · 2025-07-16

• Dynamic convergence of neurodevelopment disorder risk genes: Seahorse Mito Stress and mitochondrial morphology datasets

  Zenodo (CERN European Organization for Nuclear Research) · 2025-07-16

• Dynamic convergence of neurodevelopment disorder risk genes: Seahorse Mito Stress and mitochondrial morphology datasets

  Zenodo (CERN European Organization for Nuclear Research) · 2025-07-16

• Pathologist-Read vs AI-Driven Assessment of Tumor-Infiltrating Lymphocytes in Melanoma

  JAMA Network Open · 2025-07-03 · 12 citations

• Abstract 2424: Integrating digital spatial profiling and H&E images to develop predictive biomarkers for immunotherapy outcomes in triple-negative breast cancer from imputed spatial gene expression

  Cancer Research · 2025-04-21

• Quantum variational autoencoder utilizing regularized mixed-state latent representations

  Physical review. A/Physical review, A · 2025-04-11 · 9 citations

• Variational methods for Learning Multilevel Genetic Algorithms using the Kantorovich MonadPreprint

  ArXiv.org · 2024-11-14