José P. Faria

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• KBase: Open-source Platform for Collaborative Biological Data Analysis and Publication

  Journal of Molecular Biology · 2026-02-01 · 1 citations

• Modeling neutrophilic iron-oxidizing bacteria: a KBase narrative resource describing newly integrated metabolic reactions

  Microbiology Resource Announcements · 2026-01-16

• Emergence and disruption of cooperativity in a denitrifying microbial community

  The ISME Journal · 2025-01-01 · 8 citations

• TUTORIAL: A new custom metabolic model for iron-oxidizing bacteria

  OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) · 2025-01-01

• A functional microbiome catalogue crowdsourced from North American rivers

  Nature · 2024-11-20 · 50 citations

• Emergence and disruption of cooperativity in a denitrifying microbial communityPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-10-24