Joseph R. Ecker

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• A Community Standard Multispecies Cell Atlas of the Basal Ganglia

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-04-15 · 1 citations

• Alternative oxidase and ethylene form a positive feed-forward loop in mitochondrial retrograde signaling

  Plant Communications · 2026-01-30 · 1 citations

• An Integrated Single-Cell and Epigenomic Resource for Comparative Analysis of the Basal Ganglia

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-01-30 · 2 citations

• Author Correction: An ABA-increased interaction of the PYL6 ABA receptor with MYC2 Transcription Factor: A putative link of ABA and JA signalling

  Scientific Reports · 2026-01-08

• Circuit specific specialization of human basal ganglia astrocytes

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-12-22 · 1 citations

• Multiscale Spatial Transcriptomic Atlas of Human Basal Ganglia Cell-Type and Cellular Community Organization

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-12-05 · 2 citations

• Brain Region-Specific Epigenomic Reorganization and Altered Cell States in Alzheimer’s DiseasePreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-09-30

• Innate immune molecular landscape following controlled human influenza virus infection

  Cell Reports · 2025-09-17 · 4 citations

• Dissecting epigenome dynamics in human immune cells upon viral and chemical exposure by multimodal single-cell profilingPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-09-11 · 1 citations

• Cell-type-specific enrichment of somatic aneuploidy in the mammalian brain

  Neuron · 2025-09-01 · 2 citations

• Drought recovery in plants triggers a cell-state-specific immune activation

  Nature Communications · 2025-08-29 · 21 citations

• A single-cell, spatial transcriptomic atlas of the Arabidopsis life cycle

  Nature Plants · 2025-08-19 · 44 citations

• Single-cell polygenic risk scores dissect cellular and molecular heterogeneity of complex human diseases

  Nature Biotechnology · 2025-07-25 · 10 citations

• Evaluating methods for the prediction of cell-type-specific enhancers in the mammalian cortex

  Cell Genomics · 2025-05-21 · 16 citations

• Maternal Immune Activation Disrupts Epigenomic and Functional Maturation of Cortical Excitatory NeuronsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-04-29

• DNA Methylation Dynamics of Dose-dependent Acute Exercise, Training Adaptation, and DetrainingPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-04-25 · 1 citations

• Single-Cell Epigenomics Uncovers Heterochromatin Instability and Transcription Factor Dysfunction during Mouse Brain AgingPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-04-23 · 2 citations

• Cell-type-specific transposable element demethylation and TAD remodeling in the aging mouse brainPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-04-21 · 1 citations

• Human Body Single-Cell Atlas of 3D Genome Organization and DNA MethylationPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-03-24 · 10 citations

• Stress drives plasticity in leaf maturation transcriptional dynamicsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-02-25 · 1 citations