Joseph R. Nery

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Transient cell states encode positional information to direct asymmetric growth

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-05-22

• Stress drives plasticity in leaf ageing transcriptional dynamics in Arabidopsis thaliana

  Nature Plants · 2026-03-19 · 2 citations

• Genome-scale functional mapping of the mammalian whole brain with in vivo Perturb-seq

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-03-18 · 3 citations

• Cell-type-specific transposon demethylation and TAD remodeling in aging mouse brain

  Cell · 2026-03-11 · 1 citations

• A Multimodal Single-Cell Epigenomic and 3D Genome Atlas of the Human Basal Ganglia

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-02-14 · 1 citations

• Genetics and environment distinctively shape the human immune cell epigenome

  Nature Genetics · 2026-01-27 · 3 citations

• Brain Region-Specific Epigenomic Reorganization and Altered Cell States in Alzheimer’s DiseasePreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-09-30

• Drought recovery in plants triggers a cell-state-specific immune activation

  Nature Communications · 2025-08-29 · 21 citations

• A single-cell, spatial transcriptomic atlas of the Arabidopsis life cycle

  Nature Plants · 2025-08-19 · 44 citations

• Maternal Immune Activation Disrupts Epigenomic and Functional Maturation of Cortical Excitatory NeuronsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-04-29

• DNA Methylation Dynamics of Dose-dependent Acute Exercise, Training Adaptation, and DetrainingPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-04-25 · 1 citations

• Cell-type-specific transposable element demethylation and TAD remodeling in the aging mouse brainPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-04-21 · 1 citations

• Human Body Single-Cell Atlas of 3D Genome Organization and DNA MethylationPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-03-24 · 10 citations

• Stress drives plasticity in leaf maturation transcriptional dynamicsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-02-25 · 1 citations

• A rare PRIMER cell state in plant immunity

  Nature · 2025-01-08 · 88 citations

• Cell-Type-Specific Transposable Element Demethylation and TAD Remodeling in the Aging Mouse BrainPreprint

  SSRN Electronic Journal · 2025-01-01

• Exaptation of ancestral cell-identity networks enables C4 photosynthesis

  Nature · 2024-11-20 · 74 citations