Joshua M. Stuart

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets

  UNC Libraries · 2025-12-31

• 1112 A pan-cancer single-cell multimodal atlas of antigen-specific T cells and scalable framework for mapping antigen specificity

  Regular and Young Investigator Award Abstracts · 2025-11-01

• Pan-cancer immune and stromal deconvolution predicts clinical outcomes and mutation profiles

  UNC Libraries · 2025-07-25

• Transcriptional profiling clarifies a program of enzalutamide extreme non-response in lethal prostate cancer

  npj Precision Oncology · 2025-07-07

• Pan-cancer immune and stromal deconvolution predicts clinical outcomes and mutation profiles

  Scientific Reports · 2025-07-04 · 4 citations

• Transcriptional profiling to identify a program of enzalutamide extreme non-response in lethal prostate cancer.

  Journal of Clinical Oncology · 2025-05-28

• Protocol for assessing distances in pathway space for classifier feature sets from machine learning methods

  STAR Protocols · 2025-03-18

• A spatiotemporal and machine-learning platform facilitates the manufacturing of hPSC-derived esophageal mucosa

  Developmental Cell · 2025-01-10 · 6 citations

• Transformer-based modeling of Clonal Selection and Expression Dynamics reveals resistance mechanisms in breast cancer

  npj Systems Biology and Applications · 2025-01-10 · 2 citations

• Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets

  Cancer Cell · 2025-01-02 · 28 citations

• Single-cell chromatin accessibility reveals malignant regulatory programs in primary human cancers

  Science · 2024-09-05 · 47 citations

• Associating transcription factors to single-cell trajectories with DREAMIT

  Genome biology · 2024-08-14 · 3 citations