Justin M. Zook

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Long-read genome sequencing reveals complex variability in lentiviral provirus insertions in deeply characterized Clonal CD19 CAR-T vector copy number reference cell lines

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-06-16

• A complete human pancreatic cancer genome

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-05-06 · 1 citations

• Complete genomes of a multi-generational pedigree to expand studies of genetic and epigenetic inheritance

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-12-16 · 3 citations

• Aardvark: Sifting through differences in a mound of variantsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-10-06 · 1 citations

• A complete diploid human genome benchmark for personalized genomicsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-09-21 · 21 citations

• Correction: Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair

  Scientific Data · 2025-08-08

• The Platinum Pedigree: a long-read benchmark for genetic variants

  Nature Methods · 2025-08-01 · 13 citations

• Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair

  Scientific Data · 2025-07-16 · 9 citations

• Interlaboratory assessment of candidate reference materials for lentiviral vector copy number and integration site measurements

  Molecular Therapy — Methods & Clinical Development · 2025-04-21 · 2 citations

• Unraveling the hidden complexity of cancer through long-read sequencing

  Genome Research · 2025-03-20 · 10 citations

• Small variant benchmark from a complete assembly of X and Y chromosomes

  Nature Communications · 2025-01-08 · 7 citations

• A robust benchmark for detecting low-frequency variants in the HG002 Genome In A Bottle NIST reference material.Preprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-12-05 · 5 citations

• Why Whole Genome Sequencing Methods Differ (7th Annual SFAF Meeting, 2012)

  OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) · 2024-11-14

• The GIAB genomic stratifications resource for human reference genomes

  Nature Communications · 2024-10-18 · 53 citations

• StratoMod: predicting sequencing and variant calling errors with interpretable machine learning

  Communications Biology · 2024-10-13 · 4 citations

• GrapHiC: An Integrative Graph Based Approach for Imputing Missing Hi-C Reads

  IEEE Transactions on Computational Biology and Bioinformatics · 2024-10-11 · 1 citations

• The Platinum Pedigree: A long-read benchmark for genetic variantsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-10-03 · 6 citations

• Jointly benchmarking small and structural variant calls with vcfdist

  Genome biology · 2024-10-02 · 5 citations

• High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation

  Genome Research · 2024-10-02 · 77 citations

• Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pairPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-09-22 · 6 citations