Karsten Zengler

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Rational engineering of facultative anaerobiosis enables commensal survival in the oxygenated gut

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-06-06

• Predictive Algal Systems Biology: Integrating Omics, Genome-Scale Metabolic Models, and Machine Learning

  Bioengineering · 2026-05-28

• Predicting competition and substrate preferences for targeted microbiome alteration

  Cell · 2026-04-17

• A Multi-Omics Processing Pipeline (MOPP) for Extracting Taxonomic and Functional Insights from Metaribosome Profiling (metaRibo-Seq) data

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-03-14

• Pan-repository analysis reveals a drug-activating function of microbial bile acid conjugation

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-03-04 · 1 citations

• Biomolecular Films for Direct Air Capture of CO<sub>2</sub>

  2026-02-13

• Multi-omics Analyses of Facial Skin in Acne Identify Distinct Microbial and Metabolic Features at Lesional and Non-lesional Sites

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-02-10

• A searchable metadata network graph for microbiome metabolomics

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-02-05 · 2 citations

• Synthesis-driven reverse metabolomics reveals 3-hydroxy <i>N</i> -acyl amides as gut microbial molecules

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-01-08 · 1 citations

• Bioprinted Core-Shell Living Material Platform for Spatially Controlled Encapsulation of Bacillus subtilis and Sustained Metabolite ExchangePreprint

  SSRN Electronic Journal · 2026-01-01

• A resource to empirically establish drug exposure records directly from untargeted metabolomics data

  Nature Communications · 2025-12-09 · 3 citations

• Microbiome-derived bile acid signatures in early life and their association with islet autoimmunity

  Nature Communications · 2025-12-03 · 8 citations

• Metabolism and gene expression models for the microbiome reveal how diet and metabolic dysbiosis impact disease

  Cell Systems · 2025-11-20 · 3 citations

• Breaking the reproducibility barrier with standardized protocols for plant-microbiome research.

  UNC Libraries · 2025-10-09

• Genome-resolved biogeography of Phaeocystales, cosmopolitan bloom-forming algae

  Nature Communications · 2025-09-29 · 2 citations

• Breaking the reproducibility barrier with standardized protocols for plant–microbiome research

  PLoS Biology · 2025-09-08 · 12 citations

• Interaction between haploinsufficiency of PTPN2 and patient microbiome promotes autoimmune arthritis in mice

  Journal of Autoimmunity · 2025-08-01 · 1 citations

• Unveiling organ-specific metabolism of <i>Citrus clementina</i>

  Proceedings of the National Academy of Sciences · 2025-07-16 · 4 citations

• Current state of microbiota clinical applications in neonatal and pediatric bacterial infections

  Gut Microbes · 2025-07-06 · 5 citations

• The microbiome diversifies long- to short-chain fatty acid-derived N-acyl lipids

  Cell · 2025-06-10 · 28 citations