Kishwar Shafin

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• A complete human pancreatic cancer genome

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-05-06 · 1 citations

• 71. Improved tumor profiling and diagnosis via long-read variant detection toolkit

  Cancer Genetics · 2025-12-01

• Rapid, accurate long- and short-read mapping to large pangenome graphs with vg GiraffePreprint

  Research Square · 2025-10-23

• Accurate somatic small variant discovery for multiple sequencing technologies with DeepSomatic

  Nature Biotechnology · 2025-10-16 · 17 citations

• Rapid, accurate long- and short-read mapping to large pangenome graphs with vg GiraffePreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-10-01 · 3 citations

• A complete diploid human genome benchmark for personalized genomicsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-09-21 · 21 citations

• Accurate human genome analysis with element avidity sequencing

  BMC Bioinformatics · 2025-07-25 · 5 citations

• Pangenome-aware DeepVariantPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-06-06 · 4 citations

• Highly accurate assembly polishing with DeepPolisher

  Genome Research · 2025-05-19 · 8 citations

• Abstract 7436: DeepSomatic: A SNV and small-indel somatic caller using deep neural networks

  Cancer Research · 2025-04-21

• Abstract 2848: Severus: A tool for detecting and characterizing complex structural variants in cancer using long-read sequencing

  Cancer Research · 2025-04-21

• Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing

  Nature Biotechnology · 2025-04-04 · 24 citations

• Small variant benchmark from a complete assembly of X and Y chromosomes

  Nature Communications · 2025-01-08 · 7 citations

• Long-read sequencing of hundreds of diverse brains provides insight into the impact of structural variation on gene expression and DNA methylationPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-12-18 · 16 citations

• A robust benchmark for detecting low-frequency variants in the HG002 Genome In A Bottle NIST reference material.Preprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-12-05 · 5 citations

• Highly accurate assembly polishing with DeepPolisherPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-09-19 · 4 citations

• DeepSomatic: Accurate somatic small variant discovery for multiple sequencing technologiesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-08-19 · 17 citations

• Local read haplotagging enables accurate long-read small variant calling

  Nature Communications · 2024-07-13 · 20 citations