Konstantinos T. Konstantinidis

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• A simple mathematical model for the discontinuity in average nucleotide identity distributions in prokaryotesPreprint

  Research Square · 2026-06-24

• Sample information for the metagenomes from the Gulf of Mexico collected on R/V Endeavor cruise EN509 in May 2012

  Open MIND · 2026-06-12

• Phylogenomic description of three novel species of the <i>Microbulbifer</i> genus, phylum Pseudomonadota, isolated from marine sponges and corals

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-06-11

• Single-cell amplified genomes (SAGs) collected during CTD casts in the Eastern Tropical Pacific Ocean on R/V Atlantis cruise AT50-08 during February-March 2023

  Open MIND · 2026-06-10

• Sample information and accession numbers for metagenome samples collected in the Eastern Tropical Pacific Oxygen Minimum Zone on R/V Sally Ride cruise SR2114 during December 2021 to January 2022

  Open MIND · 2026-05-18

• Divergent anaerobic fate of biodegradable plastics in landfill leachatePreprint

  Research Square · 2026-05-04

• Environmental exposures associated with the gut microbiome and resistome of pregnant women and children in Northwest Ecuador

  Nature Communications · 2025-12-13 · 1 citations

• ROCker models for reliable detection and typing of short-read sequences carrying <i>mcr</i> , <i>erm</i> , <i>mph</i> , and <i>lnu</i> antibiotic resistance genes

  Microbiology Spectrum · 2025-10-27

• Metagenomics reveal allopatric speciation and higher connectivity among coastal vs. inland hypersaline lakes and solar salternsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-10-01 · 1 citations

• A novel bacterial protein family that catalyses nitrous oxide reduction

  Nature · 2025-08-20 · 17 citations

• The Impact of Urban Water Supply Improvements on Infant Enteric Pathogen Infection, Diarrhea, and Growth: Results from the PAASIM Matched Cohort StudyPreprint

  Research Square · 2025-07-18 · 2 citations

• Metagenome-based vertical profiling of the Gulf of Mexico highlights its uniqueness and far-reaching effects of freshwater inputPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-07-17

• Viral adsorption to Moore swabs in passive wastewater samplingPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-06-02

• SourceApp: A Novel Metagenomic Source Tracking Tool that can Distinguish between Fecal Microbiomes Using Genome-To-Source Associations Benchmarked Against Mixed Input Spike-In Mesocosms

  Environmental Science & Technology · 2025-05-06 · 1 citations

• Parallel deployment of passive and composite samplers for surveillance and variant profiling of SARS-CoV-2 in sewage

  UNC Libraries · 2025-04-25

• FastAAI: efficient estimation of genome average amino acid identity and phylum-level relationships using tetramers of universal proteins

  Nucleic Acids Research · 2025-04-22 · 31 citations

• Urban water network upgrades improve quality and access to drinking water in the PAASIM matched cohort study in Beira, MozambiquePreprint

  Nature Water · 2025-04-16 · 1 citations

• Impact of an Urban Sanitation Intervention on Enteric Pathogen Detection in Soils

  UNC Libraries · 2025-04-09

• Higher pathogen load in children from Mozambique vs. USA revealed by comparative fecal microbiome profiling

  UNC Libraries · 2025-04-08

• Leveraging strain competition to address antimicrobial resistance with microbiota therapies

  Gut Microbes · 2025-04-07 · 11 citations