NIH #1R01HG013724-01A1
Sequence-to-function models for mechanistic investigations of personal genomes
Active
- Amount
- $2.2M
- Period
- 2025-09-10 → 2029-08-31
- PIs
- 3
- Est. capacity / PI
- ~9 students
Awarded at UNIVERSITY OF WASHINGTON
Maria Chikina
Full Professor(heuristic)
Bioinformatics and Genomic Networks · Molecular Biology
h-index36
i10-index72
Publications174
Citations6,556
Grants
14 total · 4 active
NIH #5R01HG009299-08
Title: Functional Annotation of Genomes via Phenotypic Convergence within Large Multi-species Alignments
Active
- Amount
- $558K
- Period
- 2017-05-01 → 2027-06-30
- PIs
- 2
- Est. capacity / PI
- ~0 students
Awarded at UNIVERSITY OF PITTSBURGH AT PITTSBURGH
NIH #5R01HG009299-07
Title: Functional Annotation of Genomes via Phenotypic Convergence within Large Multi-species Alignments
Active
- Amount
- $552K
- Period
- 2017-05-01 → 2027-06-30
- PIs
- 2
- Est. capacity / PI
- ~0 students
Awarded at UNIVERSITY OF PITTSBURGH AT PITTSBURGH
Student capacity is a rough estimate from remaining award size, split equally among PIs. Actual funding decisions vary.
Career Trajectory
Research Cluster Map
Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.
Potential Collaborators
Recent Publications
Last 2 years · showing 20 of 20Nature Communications · 2026-04-27
Nature Communications · 2026-03-21
BUSTED-PH: Isolating the genomic signatures of convergent phenotypes
bioRxiv (Cold Spring Harbor Laboratory) · 2026-02-02 · 1 citations
Genetics · 2026-01-01
MoleRate: comparing molecular relative evolutionary rates to detect convergent evolution
Evolution · 2025-12-11
Minus the Error: Testing for Positive Selection in the Presence of Residual Alignment ErrorsPreprint
eLife · 2025-06-26 · 3 citations
Minus the Error: Testing for Positive Selection in the Presence of Residual Alignment ErrorsPreprint
eLife · 2025-06-26 · 1 citations
2025-06-26
“Frustratingly Easy” Domain Adaptation for Cross-Species Transcription Factor Binding PredictionPreprint
Lecture notes in computer science · 2025-05-26
Deep genomic models of allele-specific measurementsPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-04-15 · 3 citations
A scalable approach to investigating sequence-to-expression prediction from personal genomesPreprint
Research Square · 2025-03-06 · 2 citations
A scalable approach to investigating sequence-to-function predictions from personal genomesPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2025-02-21 · 4 citations
Deep Genomic Models of Allele-Specific MeasurementsPreprint
SSRN Electronic Journal · 2025-01-01
Best holdout assessment is sufficient for cancer transcriptomic model selection
Patterns · 2024-12-01 · 1 citations
2024-11-21 · 3 citations
Minus the Error: Testing for Positive Selection in the Presence of Residual Alignment ErrorsPreprint
bioRxiv (Cold Spring Harbor Laboratory) · 2024-11-15 · 8 citations
Molecular Biology and Evolution · 2024-10-14 · 11 citations
Bioinformatics · 2024-09-01 · 7 citations
iScience · 2024-08-23 · 6 citations
Unlocking gene regulation with sequence-to-function models
Nature Methods · 2024-08-01 · 34 citations