Marinka Žitnik

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Activity-cliff awareness enables robust graph learning for molecular property prediction

  ChemRxiv · 2026-06-15

• Activity-cliff awareness enables robust graph learning formolecular property prediction

  ChemRxiv · 2026-06-12

• StereoPep: Do Molecular Models Understand Stereochemistry? A Benchmark on Synthetic Diastereomeric Peptides

  ChemRxiv · 2026-05-24

• PhylaFlow: Hybrid Flow Matching in Billera-Holmes-Vogtmann Tree Space for Phylogenetic Inference

  ArXiv.org · 2026-05-21

• PhylaFlow: Hybrid Flow Matching in Billera-Holmes-Vogtmann Tree Space for Phylogenetic InferencePreprint

  arXiv (Cornell University) · 2026-05-21

• Phenotypic prediction of missense variants via deep contrastive learning

  Nature Biomedical Engineering · 2026-04-14

• Toward AI-Powered Cancer Etiology Research

  Cancer Discovery · 2026-04-13

• Generative Artificial Intelligence for Biology: Toward Unifying Models, Algorithms, and Modalities

  ChemRxiv · 2026-04-06

• Quantum-machine-assisted drug discoveryPreprint

  npj Drug Discovery. · 2026-01-07 · 6 citations

• Geranium: Multimodal Retrieval of Genomics Data Visualizations

  2025-12-27

• Greater than the Sum of Its Parts: Building Substructure into Protein Encoding Models

  ArXiv.org · 2025-12-19

• Greater than the Sum of Its Parts: Building Substructure into Protein Encoding ModelsPreprint

  PubMed Central · 2025-12-19

• DQVis Dataset: Natural Language to Biomedical Visualization

  2025-12-15

• Graph AI generates neurological hypotheses validated in molecular, organoid, and clinical systemsPreprint

  ArXiv.org · 2025-12-13

• GNN101: Visual Learning of Graph Neural Networks in Your Web Browser

  IEEE Transactions on Visualization and Computer Graphics · 2025-11-21 · 1 citations

• Protein Structure Tokenization via Geometric Byte Pair EncodingPreprint

  ArXiv.org · 2025-11-13 · 2 citations

• CONCERT predicts niche-aware perturbation responses in spatial transcriptomicsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-11-10 · 1 citations

• Abstract 4366734: Mortality Prediction in Cardiogenic Shock Using a Time Series Machine Learning Foundation Model

  Circulation · 2025-11-03

• Structure-Based Drug Design with Geometric Deep Learning: A Comprehensive Survey

  ACM Computing Surveys · 2025-10-13

• A global log for medical AIPreprint

  arXiv (Cornell University) · 2025-10-05