Mark Gerstein

Yale University

Full Professor(heuristic)

Genomics and Phylogenetic Studies · Molecular Biology

h-index191
i10-index660
Publications1,153
Citations261,340

Grants

50 total · 19 active

NIH #5UM1DA051410-05

The Y-SCORCH Data Generation Center at Yale for Single-Cell Opioid Responses in the Context of HIV

Expiring Soon
Amount
$3.0M
Period
2020-08-01 → 2026-07-31
PIs
3
Est. capacity / PI
~0 students

NIH #5UM1DA051410-04

The Y-SCORCH Data Generation Center at Yale for Single-Cell Opioid Responses in the Context of HIV

Expiring Soon
Amount
$3.0M
Period
2020-08-01 → 2026-07-31
PIs
3
Est. capacity / PI
~0 students

NIH #5R01DA063148-02

Y-SCORCH 2.0: Further Data Mining and Functional Characterization for Single Cell Opioid Responses in the Context of HIV (SCORCH) Program

Active
Amount
$578K
Period
2025-07-15 → 2030-03-31
PIs
3
Est. capacity / PI
~2 students

Student capacity is a rough estimate from remaining award size, split equally among PIs. Actual funding decisions vary.

All Grants

50 total · 19 active

NIH #5UM1DA051410-05

The Y-SCORCH Data Generation Center at Yale for Single-Cell Opioid Responses in the Context of HIV

Expiring Soon
Amount
$3.0M
Period
2020-08-01 → 2026-07-31
PIs
3
Est. capacity / PI
~0 students

NIH #5UM1DA051410-04

The Y-SCORCH Data Generation Center at Yale for Single-Cell Opioid Responses in the Context of HIV

Expiring Soon
Amount
$3.0M
Period
2020-08-01 → 2026-07-31
PIs
3
Est. capacity / PI
~0 students

NIH #5R01DA063148-02

Y-SCORCH 2.0: Further Data Mining and Functional Characterization for Single Cell Opioid Responses in the Context of HIV (SCORCH) Program

Active
Amount
$578K
Period
2025-07-15 → 2030-03-31
PIs
3
Est. capacity / PI
~2 students

NIH #5R01DA063316-02

Team Science for MultiScale Data Mining and Functional Validation of Single-Cell Opioid Responses in the Context of HIV

Active
Amount
$527K
Period
2025-07-15 → 2030-03-31
PIs
3
Est. capacity / PI
~2 students

Awarded at UNIVERSITY OF CALIFORNIA-IRVINE

NIH #1R01DA063148-01

Y-SCORCH 2.0: Further Data Mining and Functional Characterization for Single Cell Opioid Responses in the Context of HIV (SCORCH) Program

Active
Amount
$570K
Period
2025-07-15 → 2030-03-31
PIs
3
Est. capacity / PI
~2 students

NIH #1R01DA063316-01

Team Science for MultiScale Data Mining and Functional Validation of Single-Cell Opioid Responses in the Context of HIV

Active
Amount
$558K
Period
2025-07-15 → 2030-03-31
PIs
3
Est. capacity / PI
~2 students

Awarded at UNIVERSITY OF CALIFORNIA-IRVINE

NIH #1R01DA065184-01

Characterizing genetic effects on molecular phenotypes at the single-cell resolution across brain regions in the context of substance use disorder and HIV

Active
Amount
$2.3M
Period
2026-03-01 → 2030-02-28
PIs
3
Est. capacity / PI
~11 students

NIH #1OT2OD040572-01

Data science approaches to autism: environmental modulators of the transcriptome and gene-x-environment interactions

Active
Amount
$4.3M
Period
2025-09-29 → 2028-09-28
PIs
2
Est. capacity / PI
~26 students

Awarded at UNIVERSITY OF CALIFORNIA LOS ANGELES

NIH #5U24MH136793-03

PsychENCODE Data Analysis and Coordination Center

Active
Amount
$831K
Period
2024-05-01 → 2028-02-29
PIs
2
Est. capacity / PI
~3 students

Awarded at UNIV OF MASSACHUSETTS MED SCH WORCESTER

NIH #5U24MH136793-02

PsychENCODE Data Analysis and Coordination Center

Active
Amount
$831K
Period
2024-05-01 → 2028-02-29
PIs
2
Est. capacity / PI
~3 students

Awarded at UNIV OF MASSACHUSETTS MED SCH WORCESTER

NIH #1U24MH136793-01

PsychENCODE Data Analysis and Coordination Center

Active
Amount
$858K
Period
2024-05-01 → 2028-02-29
PIs
2
Est. capacity / PI
~3 students

Awarded at UNIV OF MASSACHUSETTS MED SCH WORCESTER

NIH #1U01HG013840-01

Computational and Statistical Methods to determine variant effect across cell types and development stages

Active
Amount
$1.9M
Period
2024-09-23 → 2027-08-31
PIs
2
Est. capacity / PI
~6 students

NIH #5U24HG012108-05

Laboratory, Data Analysis, and Coordinating Center (LDACC) for the Developmental Human Genotype-Tissue Expression Project

Active
Amount
$1.7M
Period
2021-09-22 → 2027-06-30
PIs
6
Est. capacity / PI
~0 students

NIH #5T15LM007056-39

Biomedical Informatics and Data Science Training at Yale

Active
Amount
$851K
Period
1987-07-01 → 2027-06-30
PIs
2
Est. capacity / PI
~0 students

NIH #5T15LM007056-38

Biomedical Informatics and Data Science Training at Yale

Active
Amount
$576K
Period
1987-07-01 → 2027-06-30
PIs
2
Est. capacity / PI
~0 students

NIH #5T15LM007056-37

Biomedical Informatics and Data Science Training at Yale

Active
Amount
$792K
Period
1987-07-01 → 2027-06-30
PIs
2
Est. capacity / PI
~0 students

NIH #2T15LM007056-36

Biomedical Informatics and Data Science Training at Yale

Active
Amount
$737K
Period
1987-07-01 → 2027-06-30
PIs
2
Est. capacity / PI
~0 students

NIH #3U24HG012012-05S1

A Data and Administrative Coordinating Center for the Impact of Genomic Variation on Function Consortium

Active
Amount
$3.8M
Period
2021-09-01 → 2027-05-31
PIs
3
Est. capacity / PI
~3 students

Awarded at STANFORD UNIVERSITY

NIH #5U24HG012012-05

A Data and Administrative Coordinating Center for the Impact of Genomic Variation on Function Consortium

Active
Amount
$4.1M
Period
2021-09-01 → 2027-05-31
PIs
3
Est. capacity / PI
~3 students

Awarded at STANFORD UNIVERSITY

NIH #5R21AG087875-02

Team science approach to integrate machine-learning models and functional genomics to study aging in the context of Alzheimer's disease

Amount
$220K
Period
2024-09-15 → 2026-06-30
PIs
2
Est. capacity / PI
~0 students

NIH #1R21AG087875-01

Team science approach to integrate machine-learning models and functional genomics to study aging in the context of Alzheimer's disease

Amount
$239K
Period
2024-09-15 → 2026-06-30
PIs
2
Est. capacity / PI
~0 students

NIH #5U24HG012108-04

Laboratory, Data Analysis, and Coordinating Center (LDACC) for the Developmental Human Genotype-Tissue Expression Project

Amount
$1.7M
Period
2021-09-22 → 2026-06-30
PIs
6
Est. capacity / PI
~0 students

NIH #5R01HG010749-05

Enhancing open data sharing for functional genomics experiments: Measures to quantify genomic information leakage and file formats for privacy preservation

Amount
$516K
Period
2020-09-02 → 2026-06-30
PIs
1
Est. capacity / PI
~0 students

NIH #5U24HG012108-03

Laboratory, Data Analysis, and Coordinating Center (LDACC) for the Developmental Human Genotype-Tissue Expression Project

Amount
$1.7M
Period
2021-09-22 → 2026-06-30
PIs
6
Est. capacity / PI
~0 students

NIH #5U24HG012108-02

Laboratory, Data Analysis, and Coordinating Center (LDACC) for the Developmental Human Genotype-Tissue Expression Project

Amount
$1.7M
Period
2021-09-22 → 2026-06-30
PIs
6
Est. capacity / PI
~0 students

NIH #1U24HG012108-01

Laboratory, Data Analysis, and Coordinating Center (LDACC) for the Developmental Human Genotype-Tissue Expression Project

Amount
$1.8M
Period
2021-09-22 → 2026-06-30
PIs
6
Est. capacity / PI
~0 students

NIH #5R01DA051906-05

A Big Data Approach to Identify Epigenetic, Transcriptomic, and Network Dynamics as Immune Dysfunction Drivers Associated with HIV Infection and Substance Use Disorder

Amount
$536K
Period
2020-07-15 → 2026-05-31
PIs
1
Est. capacity / PI
~0 students

NIH #5U24HG012012-04

A Data and Administrative Coordinating Center for the Impact of Genomic Variation on Function Consortium

Amount
$4.1M
Period
2021-09-01 → 2026-05-31
PIs
3
Est. capacity / PI
~0 students

Awarded at STANFORD UNIVERSITY

NIH #3U24HG012012-03S2

Support for the use and evaluation of large cloud-based genomic datasets.

Amount
$217K
Period
2023-09-07 → 2026-05-31
PIs
2
Est. capacity / PI
~0 students

Awarded at STANFORD UNIVERSITY

NIH #5U24HG012012-03

A Data and Administrative Coordinating Center for the Impact of Genomic Variation on Function Consortium

Amount
$3.9M
Period
2021-09-01 → 2026-05-31
PIs
3
Est. capacity / PI
~0 students

Awarded at STANFORD UNIVERSITY

NIH #5U24HG012012-02

A Data and Administrative Coordinating Center for the Impact of Genomic Variation on Function Consortium

Amount
$3.9M
Period
2021-09-01 → 2026-05-31
PIs
2
Est. capacity / PI
~0 students

Awarded at STANFORD UNIVERSITY

NIH #1U24HG012012-01

A Data and Administrative Coordinating Center for the Impact of Genomic Variation on Function Consortium

Amount
$2.7M
Period
2021-09-01 → 2026-05-31
PIs
2
Est. capacity / PI
~0 students

Awarded at STANFORD UNIVERSITY

NIH #3UM1DA051410-03S1

Supplement: Human Brain Collection for Study of the Neuropathogenesis of SARS-CoV-2, HIV-1, and Opioid Use Disorder

Amount
$164K
Period
2020-08-01 → 2025-07-31
PIs
3
Est. capacity / PI
~0 students

NIH #3UM1DA051410-02S1

Supplement: Human Brain Collection for Study of the Neuropathogenesis of SARS-CoV-2, HIV-1, and Opioid Use Disorder

Amount
$167K
Period
2020-08-01 → 2025-07-31
PIs
3
Est. capacity / PI
~0 students

NIH #5UM1DA051410-03

The Y-SCORCH Data Generation Center at Yale for Single-Cell Opioid Responses in the Context of HIV

Amount
$3.0M
Period
2020-08-01 → 2025-07-31
PIs
3
Est. capacity / PI
~0 students

NIH #5U54DA049098-04

DATA MANAGEMENT AND RESOURCE REPOSITORY FOR THE exRNA ATLAS PHASE II

Amount
$500K
Period
2019-08-15 → 2025-07-31
PIs
3
Est. capacity / PI
~0 students

Awarded at BAYLOR COLLEGE OF MEDICINE

NIH #5UM1DA051410-02

The Y-SCORCH Data Generation Center at Yale for Single-Cell Opioid Responses in the Context of HIV

Amount
$3.0M
Period
2020-08-01 → 2025-07-31
PIs
3
Est. capacity / PI
~0 students

NIH #5R01HG010749-04

Enhancing open data sharing for functional genomics experiments: Measures to quantify genomic information leakage and file formats for privacy preservation

Amount
$526K
Period
2020-09-02 → 2025-06-30
PIs
1
Est. capacity / PI
~0 students

NIH #5R01HG010749-03

Enhancing open data sharing for functional genomics experiments: Measures to quantify genomic information leakage and file formats for privacy preservation

Amount
$526K
Period
2020-09-02 → 2025-06-30
PIs
1
Est. capacity / PI
~0 students

NIH #5R01HG010749-02

Enhancing open data sharing for functional genomics experiments: Measures to quantify genomic information leakage and file formats for privacy preservation

Amount
$526K
Period
2020-09-02 → 2025-06-30
PIs
1
Est. capacity / PI
~0 students

NIH #5R01DA051906-04

A Big Data Approach to Identify Epigenetic, Transcriptomic, and Network Dynamics as Immune Dysfunction Drivers Associated with HIV Infection and Substance Use Disorder

Amount
$549K
Period
2020-07-15 → 2025-05-31
PIs
1
Est. capacity / PI
~0 students

NIH #5R01DA051906-03

A Big Data Approach to Identify Epigenetic, Transcriptomic, and Network Dynamics as Immune Dysfunction Drivers Associated with HIV Infection and Substance Use Disorder

Amount
$561K
Period
2020-07-15 → 2025-05-31
PIs
1
Est. capacity / PI
~0 students

NIH #1RF1MH123245-01A1

Integrative analysis of genomics and imaging data from the BRAIN Initiative and other public data sources

Amount
$1.3M
Period
2021-04-01 → 2025-03-31
PIs
2
Est. capacity / PI
~0 students

NIH #3U01MH116492-05S1

1/2 Discovery and validation of neuronal enhancers associated with the development of psychiatric disorders

Amount
$280K
Period
2023-04-01 → 2024-03-31
PIs
2
Est. capacity / PI
~0 students

Awarded at UNIV OF MASSACHUSETTS MED SCH WORCESTER

NIH #5U01MH116492-05

1/2 Discovery and validation of neuronal enhancers associated with the development of psychiatric disorders

Amount
$1.1M
Period
2018-07-06 → 2024-03-31
PIs
2
Est. capacity / PI
~0 students

Awarded at UNIV OF MASSACHUSETTS MED SCH WORCESTER

NIH #5U54DA049098-03

DATA MANAGEMENT AND RESOURCE REPOSITORY FOR THE exRNA ATLAS PHASE II

Amount
$500K
Period
2019-08-15 → 2023-07-31
PIs
3
Est. capacity / PI
~0 students

Awarded at BAYLOR COLLEGE OF MEDICINE

NIH #3U54DA049098-03S1

DATA MANAGEMENT AND RESOURCE REPOSITORY FOR THE exRNA ATLAS PHASE II

Amount
$992K
Period
2019-08-15 → 2023-07-31
PIs
3
Est. capacity / PI
~0 students

Awarded at BAYLOR COLLEGE OF MEDICINE

NIH #5U01MH116492-04

1/2 Discovery and validation of neuronal enhancers associated with the development of psychiatric disorders

Amount
$1.1M
Period
2018-07-06 → 2023-03-31
PIs
2
Est. capacity / PI
~0 students

Awarded at UNIV OF MASSACHUSETTS MED SCH WORCESTER

NIH #3U24HG009446-04S2

EDAC: ENCODE Data Analysis Center

Amount
$386K
Period
2022-02-04 → 2022-08-31
PIs
2
Est. capacity / PI
~0 students

Awarded at UNIV OF MASSACHUSETTS MED SCH WORCESTER

NIH #3U24HG009446-04S1

EDAC: ENCODE Data Analysis Center

Amount
$2.0M
Period
2021-02-01 → 2022-08-31
PIs
2
Est. capacity / PI
~0 students

Awarded at UNIV OF MASSACHUSETTS MED SCH WORCESTER

Career Trajectory

Research Cluster Map

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