Mathieu Almeida

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Hydrogen metabolism shapes gut microbiome into health-associated configurations

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-05-07

• Microbiome signature of Parkinson’s disease in healthy and genetically at-risk individuals

  Nature Medicine · 2026-04-20 · 1 citations

• Accurate profiling of microbial communities for shotgun metagenomic sequencing with Meteor2

  Microbiome · 2025-11-06 · 6 citations

• Exploring the relationship between GBA1 host genotype and gut microbiome in the GBA1L444P/WT mouse model: implications for Parkinson’s disease pathogenesis

  Frontiers in Neuroscience · 2025-10-01 · 3 citations

• Reference-guided assembly of metagenomes with MetaCompass

  Cell Reports Methods · 2025-09-27 · 4 citations

• Correction: Associations Among Diet, Health, Lifestyle, and Gut Microbiota Composition in the General French Population: Protocol for the Le French Gut – Le Microbiote Français Study

  JMIR Research Protocols · 2025-07-14

• Correction: Associations Among Diet, Health, Lifestyle, and Gut Microbiota Composition in the General French Population: Protocol for the Le French Gut – Le Microbiote Français Study (Preprint)Preprint

  2025-07-04

• Microbiome signature of Parkinson disease in healthy and genetically at-risk individualsPreprint

  medRxiv · 2025-05-19 · 2 citations

• Associations Among Diet, Health, Lifestyle, and Gut Microbiota Composition in the General French Population: Protocol for the Le French Gut – Le Microbiote Français Study

  JMIR Research Protocols · 2025-03-31 · 3 citations

• Accurate profiling of microbial communities for shotgun metagenomic sequencing with Meteor2Preprint

  Research Square · 2025-03-06 · 4 citations

• Enhanced Computational and Experimental Approaches for Comparative Analysis of the Human MycobiomePreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-02-09

• Protocol for whole shotgun metagenomics pipeline for the study of stool human digestive microbiota v1

  2024-12-17

• Exploring the relationship between <i>GBA1</i> host genotype and gut microbiome in the <i>GBA1</i> ^L444P/WT mouse model: Implications for Parkinson disease pathogenesisPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-12-15

• Transient colonizing microbes promote gut dysbiosis and functional impairment

  npj Biofilms and Microbiomes · 2024-09-08 · 31 citations

• Le French Gut – le microbiote français: a prospective French citizen science study aiming to analyze 100,000 fecal samples with associated nutritional and clinical data (Preprint)Preprint

  2024-07-30 · 1 citations